CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25280.1	CDX68112	AT1G75950.1	12795696
AT1G25280.1	CDX73212	AT1G75950.1	12795696
AT1G25280.1	CDX80590	AT1G75950.1	12795696
AT1G25280.1	CDX85931	AT1G75950.1	12795696
AT1G25280.1	CDX87650	AT1G75950.1	12795696
AT1G25280.1	CDY13521	AT1G75950.1	12795696
AT1G25280.1	CDY39073	AT1G75950.1	12795696
AT1G25280.1	CDX68112	AT1G75950.1	25168737
AT1G25280.1	CDX73212	AT1G75950.1	25168737
AT1G25280.1	CDX80590	AT1G75950.1	25168737
AT1G25280.1	CDX85931	AT1G75950.1	25168737
AT1G25280.1	CDX87650	AT1G75950.1	25168737
AT1G25280.1	CDY13521	AT1G75950.1	25168737
AT1G25280.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012486.1-P	Field mustard	cytosol	99.53	96.39
CDY72036	Canola	cytosol	99.3	96.16
CDY51990	Canola	cytosol	88.11	89.36
CDY36119	Canola	cytosol	87.88	89.34
CDX84977	Canola	cytosol	86.95	88.81
AT1G25280.1	Thale cress	cytosol	89.98	86.74
CDY42119	Canola	cytosol	87.88	86.27
CDY13913	Canola	endoplasmic reticulum, extracellular	5.83	83.33
VIT_12s0055g00460.t01	Wine grape	mitochondrion	73.43	74.29
KRH10476	Soybean	cytosol, mitochondrion	73.43	73.77
KRH43964	Soybean	cytosol, mitochondrion	72.49	72.83
PGSC0003DMT400002858	Potato	mitochondrion	72.26	72.77
Solyc10g046970.1.1	Tomato	mitochondrion	72.26	72.77
Solyc01g104670.2.1	Tomato	cytosol	71.56	71.9
PGSC0003DMT400076537	Potato	cytosol	71.56	71.9
HORVU5Hr1G023650.1	Barley	plastid	38.69	68.88
CDY45959	Canola	cytosol	68.53	68.53
CDY13570	Canola	cytosol	67.83	68.47
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	67.83	67.99
CDY65845	Canola	cytosol, mitochondrion	69.0	65.78
CDX87562	Canola	cytosol, mitochondrion	69.0	65.63
KXG23034	Sorghum	cytosol, mitochondrion	64.8	63.62
Os12t0163400-01	Rice	cytosol	65.5	63.15
TraesCS5A01G124100.1	Wheat	cytosol	63.64	62.19
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	63.4	61.96
CDY10578	Canola	mitochondrion	6.06	61.9
TraesCS5B01G123800.1	Wheat	golgi	62.94	61.5
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	62.94	61.36
TraesCS4D01G110100.1	Wheat	golgi	62.94	61.36
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	62.7	61.14
Zm00001d053179_P001	Maize	cytosol	62.24	59.6
EES08030	Sorghum	cytosol, mitochondrion	61.31	57.68
CDY25159	Canola	cytosol	49.65	56.8
CDY46301	Canola	cytosol	49.88	56.61
CDY27467	Canola	cytosol	52.21	56.42
CDY55525	Canola	cytosol	52.45	55.97
GSMUA_Achr11P...	Banana	cytosol	53.85	55.66
CDY17085	Canola	cytosol, mitochondrion	50.58	55.08
CDY65687	Canola	cytosol, mitochondrion	47.79	54.81
CDY02510	Canola	cytosol	40.79	54.52
CDY05258	Canola	mitochondrion	45.45	54.17
CDY24698	Canola	mitochondrion	44.52	54.11
CDY17028	Canola	mitochondrion, nucleus	49.42	53.67
CDY25719	Canola	cytosol	40.79	53.03
CDX92589	Canola	mitochondrion	43.59	50.0
CDY25863	Canola	cytosol, mitochondrion	43.59	49.6
CDY45927	Canola	cytosol, plastid	43.12	49.33
CDY13914	Canola	mitochondrion	25.17	44.26
CDY06747	Canola	cytosol, mitochondrion	50.12	37.2
CDY35067	Canola	nucleus	18.65	20.57
CDY69989	Canola	nucleus	18.65	20.41
CDY17084	Canola	mitochondrion	0.23	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078JIC3	EnsemblPlants:CDY66464	ProteinID:CDY66464
ProteinID:CDY66464.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00054389001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EEA474	SEG:seg	:

Description

BnaCnng51010DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIC3]

Coordinates

chrLK035278:+:564..2433

Molecular Weight (calculated)

48269.9 Da

IEP (calculated)

10.038

GRAVY (calculated)

-0.378

Length

429 amino acids

Sequence
(BLAST)

001: MSFRSIVQDL RDGLGSLSRR SFDFRLHHKG KSHGSSFREY SSSLDLSPLI VQTSRWANLP PELLLDVIKR LEESESNWPA RKHVVACASV CRSWRAMCQE
101: IVHCPEISGK LTFPVSLKQP GPRDAMIQCF IKRDKSKLTF HLFLCLSPAL IVENGKFLLS AKRTRRTTRT EYIISMDAEN ISRSSNSYLG KLRSNFLGTK
201: FLVYDTQPPP DTSSSSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPTSSLEPGG SVPNQPEKLL PPPPRSFDDS
301: FRSNISFSKF SEMGVSCEED QAETSFKPLV LKNKQPRWHE QLQCWCLNFR GRVTVASVKN FQLVAVRQPP PTQVAGSSAP AAPPEQDKVI LQFGKVGKDM
401: FTMDYRYPLS AFQAFAICLS SFDTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.