CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77280
CDX93698
CDX93699
CDY16470
CDY40610
CDY40611

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47270.1	CDX77280	AT3G60010.1	25168737
AT1G47270.1	CDX93698	AT3G60010.1	25168737
AT1G47270.1	CDX93699	AT3G60010.1	25168737
AT1G47270.1	CDY16470	AT3G60010.1	25168737
AT1G47270.1	CDY40610	AT3G60010.1	25168737
AT1G47270.1	CDY40611	AT3G60010.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17028	Canola	mitochondrion, nucleus	95.45	90.38
CDY17085	Canola	cytosol, mitochondrion	83.96	79.7
AT1G47270.1	Thale cress	nucleus	81.82	74.09
CDY13913	Canola	endoplasmic reticulum, extracellular	5.88	73.33
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	29.14	61.24
GSMUA_Achr2P23080_001	Banana	cytosol	21.93	60.29
CDY46301	Canola	cytosol	57.75	57.14
CDY25159	Canola	cytosol	57.22	57.07
Solyc04g071750.2.1	Tomato	cytosol	59.63	55.75
GSMUA_Achr6P09030_001	Banana	cytosol	53.74	55.52
CDY06747	Canola	cytosol, mitochondrion	85.03	55.02
PGSC0003DMT400016310	Potato	cytosol	58.82	54.86
Solyc03g033980.2.1	Tomato	cytosol	59.36	54.68
PGSC0003DMT400058090	Potato	cytosol	59.36	54.68
PGSC0003DMT400040088	Potato	cytosol	59.09	53.9
VIT_04s0023g01950.t01	Wine grape	cytosol	59.36	53.75
KRH28692	Soybean	cytosol	59.09	53.38
PGSC0003DMT400009280	Potato	cytosol	58.02	53.32
Solyc02g062670.2.1	Tomato	cytosol	58.29	53.04
Solyc02g085130.2.1	Tomato	cytosol	58.02	52.8
KRH76777	Soybean	cytosol	58.29	52.53
KRH69894	Soybean	cytosol	57.22	51.69
KRH08239	Soybean	cytosol	56.95	51.45
GSMUA_Achr2P22940_001	Banana	cytosol	50.27	51.23
CDY24698	Canola	mitochondrion	47.59	50.42
EES07397	Sorghum	cytosol	58.02	50.12
Zm00001d051568_P001	Maize	cytosol	57.75	49.54
Zm00001d017773_P001	Maize	cytosol	57.75	49.43
CDY27467	Canola	cytosol	52.41	49.37
HORVU6Hr1G068970.3	Barley	cytosol	56.15	49.18
TraesCS6D01G252800.1	Wheat	cytosol	55.88	49.18
CDY05258	Canola	mitochondrion	47.33	49.17
TraesCS6B01G300200.1	Wheat	cytosol	55.62	48.83
CDY55525	Canola	cytosol	52.41	48.76
TraesCS6A01G272800.1	Wheat	cytosol	55.88	48.72
CDY36119	Canola	cytosol	54.55	48.34
CDY51990	Canola	cytosol	54.28	47.99
CDY02510	Canola	cytosol	41.18	47.98
CDX84977	Canola	cytosol	53.74	47.86
CDY66464	Canola	cytosol	54.81	47.79
CDY10578	Canola	mitochondrion	5.35	47.62
CDY72036	Canola	cytosol	55.88	47.18
CDY42119	Canola	cytosol	55.08	47.14
CDX92589	Canola	mitochondrion	47.06	47.06
CDY13570	Canola	cytosol	53.21	46.82
CDY25719	Canola	cytosol	41.18	46.67
CDY45959	Canola	cytosol	53.48	46.62
CDY65845	Canola	cytosol, mitochondrion	52.67	43.78
CDX87562	Canola	cytosol, mitochondrion	52.67	43.68
CDY45927	Canola	cytosol, plastid	43.58	43.47
CDY25863	Canola	cytosol, mitochondrion	43.58	43.24
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	33.69	42.42
CDY13914	Canola	mitochondrion	27.01	41.39
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	19.79	37.56
GSMUA_Achr10P...	Banana	nucleus	20.05	35.71
Zm00001d033948_P004	Maize	cytosol	14.71	30.39
CDY35067	Canola	nucleus	21.39	20.57
CDY69989	Canola	nucleus	20.32	19.39
CDY17084	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078JK08	EnsemblPlants:CDY65687	ProteinID:CDY65687
ProteinID:CDY65687.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00048010001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF01167	PFAM:PF12937	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF75	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EF073A	SEG:seg	:	:

Description

BnaC08g46700DBnaC08g46700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK08]

Coordinates

chrLK034900:+:15981..17894

Molecular Weight (calculated)

42061.9 Da

IEP (calculated)

10.465

GRAVY (calculated)

-0.340

Length

374 amino acids

Sequence
(BLAST)

001: MSFKNIVREL RGRNKANGRR GRSHIAPEGS SSSSPSADGC FDQSVWVDLP PELLLDIIHR IESGQTSWPG RRDVVACASV CKAWREMTKE VVKVPELSGL
101: LTFPVSLKQP GPRDDSIQCF IKRERATGIY RLYLGLSPAL TGDKSKLLLL AKRVRRATGV EFIVSLSGKD FSRSSSSNYI GKLRSNFLGT KFTIYENQPS
201: PVDSGRSFNK KLSQTMRVSP WVTSSTHSYS MASILYELNV FRTRGPRRMQ CIMNTIPKKR GLIDFWSGNL GGESVVKEPL VLKNKLPRWH EQLQCWCLNF
301: KGRVTVASVK NFQLMAAAAE AGKDMNIPEE EQERVILQFG KIGKDTFTMD YRYPISAFQA FAICLSSFDT KPVR

Best Arabidopsis Sequence Match ( AT1G47270.1 )
(BLAST)

001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE

Arabidopsis Description

TULP6Tubby-like F-box protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q0WPY0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.