CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76900.1	CDX68112	AT1G75950.1	25168737
AT1G76900.1	CDX73212	AT1G75950.1	25168737
AT1G76900.1	CDX80590	AT1G75950.1	25168737
AT1G76900.1	CDX85931	AT1G75950.1	25168737
AT1G76900.1	CDX87650	AT1G75950.1	25168737
AT1G76900.1	CDY13521	AT1G75950.1	25168737
AT1G76900.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45959	Canola	cytosol	97.88	96.97
Bra040803.1-P	Field mustard	cytosol	98.12	93.29
CDY65845	Canola	cytosol, mitochondrion	91.76	86.67
CDX87562	Canola	cytosol, mitochondrion	91.53	86.25
AT1G76900.1	Thale cress	cytosol	90.82	84.84
CDY13913	Canola	endoplasmic reticulum, extracellular	5.41	76.67
HORVU5Hr1G023650.1	Barley	plastid	41.18	72.61
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	71.06	70.56
CDY51990	Canola	cytosol	68.94	69.27
CDY36119	Canola	cytosol	68.71	69.19
CDY66464	Canola	cytosol	68.47	67.83
CDX84977	Canola	cytosol	66.35	67.14
CDY72036	Canola	cytosol	69.41	66.59
CDY42119	Canola	cytosol	68.47	66.59
TraesCS4D01G110100.1	Wheat	golgi	67.76	65.45
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	67.53	65.23
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	67.53	65.23
KXG23034	Sorghum	cytosol, mitochondrion	66.35	64.53
Os12t0163400-01	Rice	cytosol	67.53	64.49
TraesCS5A01G124100.1	Wheat	cytosol	65.88	63.78
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	65.88	63.78
TraesCS5B01G123800.1	Wheat	golgi	65.65	63.55
Zm00001d053179_P001	Maize	cytosol	64.94	61.61
EES08030	Sorghum	cytosol, mitochondrion	65.18	60.75
GSMUA_Achr11P...	Banana	cytosol	56.24	57.59
CDY10578	Canola	mitochondrion	5.65	57.14
CDY02510	Canola	cytosol	41.88	55.45
CDY46301	Canola	cytosol	48.94	55.03
CDY25159	Canola	cytosol	48.47	54.93
CDY27467	Canola	cytosol	50.59	54.16
CDY55525	Canola	cytosol	50.82	53.73
CDY25719	Canola	cytosol	41.65	53.64
CDY24698	Canola	mitochondrion	44.24	53.26
CDY65687	Canola	cytosol, mitochondrion	46.82	53.21
CDY05258	Canola	mitochondrion	44.71	52.78
CDY17085	Canola	cytosol, mitochondrion	48.71	52.54
CDY17028	Canola	mitochondrion, nucleus	47.76	51.39
CDY25863	Canola	cytosol, mitochondrion	44.0	49.6
CDY45927	Canola	cytosol, plastid	43.53	49.33
CDX92589	Canola	mitochondrion	42.82	48.66
CDY13914	Canola	mitochondrion	24.0	41.8
CDY06747	Canola	cytosol, mitochondrion	48.47	35.64
CDY69989	Canola	nucleus	19.76	21.43
CDY35067	Canola	nucleus	19.06	20.82
CDY17084	Canola	mitochondrion	0.24	0.49

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078FGM2	EnsemblPlants:CDY13570	ProteinID:CDY13570
ProteinID:CDY13570.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00077946001	InterPro:IPR001810	InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EDB2B9	:	:	:

Description

BnaC02g23810DBnaC02g23810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGM2]

Coordinates

chrLK032036:+:597363..600029

Molecular Weight (calculated)

48009.8 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.387

Length

425 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR RFDFKLSSLH REGGKSRGSV QDCHEEQQQQ PLVLVKETPW ASLPPELLHD VIKRLEESES AWPARRHVVA CASVCRSWRD
101: MCKEIVQRPE LSGKITFPVS LKQPGPRDAT MQCFIKRDKS NLTYHLYLCL SPALLVENGK FLLSAKRIRR STYTEYVISM HADTISRSSN TYIGKIRSNF
201: LGTKFIIYDT QPPYNKPSQP LQPLGLSRRF YSKRVSPKVP SGSYKIAQVS YELNVLGTRG PRRMHCAMHS IPASSLAEGG TVPGQPEIIV PRSLLDESFR
301: SITSSSARFS DILEEGEAVF GEGKERVSSP LVLKNKPPRW HEQLQCWCLN FRGRVTVASV KNFQLIAANQ PQPQTSGQID GPDKIILQFG KVGKDMFTMD
401: FRYPLSAFQS FAICLSSFDT KLACE

Best Arabidopsis Sequence Match ( AT1G76900.2 )
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK
101: EIVQSPELSG KITFPVSLKQ PGPRDATMQC FIKRDKSNLT YHLYLCLSPA LLVENGKFLL SAKRIRRTTY TEYVISMHAD TISRSSNTYI GKIRSNFLGT
201: KFIIYDTQPA YNSNIARAVQ PVGLSRRFYS KRVSPKVPSG SYKIAQVSYE LNVLGTRGPR RMHCAMNSIP ASSLAEGGTV PGQPDIIVPR SILDESFRSI
301: TSSSSRKITY DYSNDFSSAR FSDILGPLSE DQEVVLEEGK ERNSPPLVLK NKPPRWHEQL QCWCLNFRGR VTVASVKNFQ LIAANQPQPQ PQPQPQPQPL
401: TQPQPSGQTD GPDKIILQFG KVGKDMFTMD FRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP1Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WI43]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.