CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G53320.1	CDX68112	AT1G75950.1	25168737
AT1G53320.1	CDX73212	AT1G75950.1	25168737
AT1G53320.1	CDX80590	AT1G75950.1	25168737
AT1G53320.1	CDX85931	AT1G75950.1	25168737
AT1G53320.1	CDX87650	AT1G75950.1	25168737
AT1G53320.1	CDY13521	AT1G75950.1	25168737
AT1G53320.1	CDY39073	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra041095.1-P	Field mustard	cytosol, mitochondrion	99.73	99.73
CDY45927	Canola	cytosol, plastid	96.55	97.07
CDY02510	Canola	cytosol	77.19	90.65
CDY25719	Canola	cytosol	79.31	90.61
AT1G53320.1	Thale cress	mitochondrion	86.74	86.28
CDY13913	Canola	endoplasmic reticulum, extracellular	5.84	73.33
GSMUA_Achr7P25250_001	Banana	cytosol	61.54	72.96
GSMUA_Achr3P31460_001	Banana	cytosol	61.01	71.88
GSMUA_Achr4P01150_001	Banana	cytosol	60.48	71.47
KRH27356	Soybean	mitochondrion	71.09	70.9
KRH21960	Soybean	mitochondrion	71.35	70.6
VIT_19s0014g01250.t01	Wine grape	mitochondrion	70.29	66.08
Solyc07g062390.2.1	Tomato	mitochondrion	66.84	65.28
PGSC0003DMT400018209	Potato	mitochondrion	66.58	65.03
CDY10578	Canola	mitochondrion	7.16	64.29
TraesCS3B01G304600.1	Wheat	cytosol	59.68	64.1
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	49.6	63.39
TraesCS3D01G270500.1	Wheat	cytosol	59.68	63.38
TraesCS3A01G270800.1	Wheat	cytosol	59.42	63.1
Zm00001d011578_P003	Maize	nucleus	59.68	62.85
HORVU3Hr1G061930.1	Barley	cytosol	59.15	62.64
Os01t0674500-01	Rice	cytosol	59.15	62.64
EES03425	Sorghum	plastid	58.89	61.67
GSMUA_Achr4P10540_001	Banana	mitochondrion	62.33	61.2
Os05t0560400-00	Rice	cytosol	57.03	61.08
Os05t0514300-01	Rice	mitochondrion	59.95	60.75
Zm00001d038691_P001	Maize	mitochondrion	58.09	59.67
EES18499	Sorghum	mitochondrion	58.62	59.41
GSMUA_Achr10P...	Banana	mitochondrion	58.09	59.19
TraesCS1A01G333900.1	Wheat	mitochondrion	57.56	58.18
TraesCS1B01G347200.1	Wheat	mitochondrion	57.29	57.91
TraesCS1D01G336400.1	Wheat	mitochondrion	57.56	57.71
Zm00001d043895_P003	Maize	cytosol	56.23	56.08
HORVU1Hr1G076900.1	Barley	cytosol	54.64	53.51
OQU78419	Sorghum	cytosol	53.05	53.05
Os01t0759100-01	Rice	cytosol, plastid	49.87	51.09
CDY25159	Canola	cytosol	48.28	48.53
CDY24698	Canola	mitochondrion	45.36	48.44
CDY46301	Canola	cytosol	47.75	47.62
CDY05258	Canola	mitochondrion	45.36	47.5
CDX92589	Canola	mitochondrion	45.62	45.99
CDY27467	Canola	cytosol	48.28	45.84
CDY55525	Canola	cytosol	48.28	45.27
CDY36119	Canola	cytosol	49.34	44.08
CDY13570	Canola	cytosol	49.6	44.0
CDX84977	Canola	cytosol	48.81	43.81
CDY51990	Canola	cytosol	49.07	43.74
CDY45959	Canola	cytosol	49.6	43.59
CDY66464	Canola	cytosol	49.6	43.59
CDY65687	Canola	cytosol, mitochondrion	43.24	43.58
CDY42119	Canola	cytosol	50.4	43.48
CDY17085	Canola	cytosol, mitochondrion	45.09	43.15
CDY17028	Canola	mitochondrion, nucleus	45.09	43.04
CDY72036	Canola	cytosol	49.6	42.21
CDY13914	Canola	mitochondrion	27.06	41.8
CDY65845	Canola	cytosol, mitochondrion	49.6	41.56
CDX87562	Canola	cytosol, mitochondrion	49.6	41.46
HORVU0Hr1G001350.2	Barley	cytosol	32.36	32.71
CDY06747	Canola	cytosol, mitochondrion	44.83	29.24
CDY69989	Canola	nucleus	19.89	19.13
CDY35067	Canola	nucleus	19.36	18.77
CDY17084	Canola	mitochondrion	0.27	0.49

Protein Annotations

MapMan:15.5.21	Gene3D:3.20.90.10	UniProt:A0A078GML8	EnsemblPlants:CDY25863	ProteinID:CDY25863	ProteinID:CDY25863.1
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00033305001	InterPro:IPR001810
InterPro:IPR025659	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	PANTHER:PTHR16517
PANTHER:PTHR16517:SF50	SUPFAM:SSF54518	InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0004EED894
SEG:seg	:	:	:	:	:

Description

BnaA05g14540DBnaA05g14540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GML8]

Coordinates

chrLK032181:+:297483..299805

Molecular Weight (calculated)

42150.3 Da

IEP (calculated)

10.186

GRAVY (calculated)

-0.509

Length

377 amino acids

Sequence
(BLAST)

001: MPLSRSLLSR RFSISSRDHQ GDTPTEPESR MLPPSSNVSG SSWSAMLPEL LSEIIRRVED TEDHWPLRRD VVACACVSNK WREITQETVR SPRNSGKITF
101: PSCLKLPGPR DFSNQCLIKR NKRTSTFYLY LPLTPSFTDK GKFLLAARRF RTGAYTEYVI SLDAHDFSQA SNAYVGKLRS DFLGTNFTVY DSKPPHNGAK
201: PSHGKASRRF ASKQISPQVP AGNFEVGHVS YKFNLLKSRG PRRMISTLHC PSSSPPPPPP SSTNQRLCDA TKMMKKPIKD GSGLTILKNK APRWHEHLQC
301: WCLNFHGRVT VASVKNFQLV ATVDQSQPSG KGDEETVLLQ FGKVGDDTFT MDYRQPLSAF QAFAICLASF GTKLACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.