Factsheet for GSMUA_Achr4P01150_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P25250_001	Banana	cytosol	82.76	83.02
GSMUA_Achr3P31460_001	Banana	cytosol	82.45	82.19
CDY02510	Canola	cytosol	71.79	71.34
CDY25719	Canola	cytosol	71.79	69.39
Zm00001d011578_P003	Maize	nucleus	74.92	66.76
TraesCS3B01G304600.1	Wheat	cytosol	73.35	66.67
EES03425	Sorghum	plastid	74.61	66.11
TraesCS3D01G270500.1	Wheat	cytosol	73.35	65.92
GSMUA_Achr7P13870_001	Banana	mitochondrion, plastid	60.81	65.76
Os01t0674500-01	Rice	cytosol	73.35	65.73
GSMUA_Achr4P10540_001	Banana	mitochondrion	79.0	65.62
TraesCS3A01G270800.1	Wheat	cytosol	72.73	65.35
HORVU3Hr1G061930.1	Barley	cytosol	72.41	64.89
Os05t0560400-00	Rice	cytosol	71.47	64.77
GSMUA_Achr10P...	Banana	mitochondrion	73.98	63.78
KRH27356	Soybean	mitochondrion	74.29	62.7
KRH21960	Soybean	mitochondrion	74.29	62.2
Os05t0514300-01	Rice	mitochondrion	72.41	62.1
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	34.48	61.8
AT1G53320.1	Thale cress	mitochondrion	73.04	61.48
TraesCS1A01G333900.1	Wheat	mitochondrion	70.85	60.59
CDY45927	Canola	cytosol, plastid	71.16	60.53
Zm00001d038691_P001	Maize	mitochondrion	69.59	60.49
EES18499	Sorghum	mitochondrion	70.53	60.48
CDY25863	Canola	cytosol, mitochondrion	71.47	60.48
Bra041095.1-P	Field mustard	cytosol, mitochondrion	71.47	60.48
TraesCS1D01G336400.1	Wheat	mitochondrion	70.85	60.11
TraesCS1B01G347200.1	Wheat	mitochondrion	70.22	60.05
Zm00001d043895_P003	Maize	cytosol	69.91	58.99
VIT_19s0014g01250.t01	Wine grape	mitochondrion	73.98	58.85
Bra030942.1-P	Field mustard	mitochondrion	72.1	58.67
HORVU1Hr1G076900.1	Barley	cytosol	69.28	57.4
PGSC0003DMT400018209	Potato	mitochondrion	68.34	56.48
Solyc07g062390.2.1	Tomato	mitochondrion	68.03	56.22
OQU78419	Sorghum	cytosol	63.95	54.11
GSMUA_Achr2P23080_001	Banana	cytosol	22.57	52.94
Os01t0759100-01	Rice	cytosol, plastid	58.62	50.82
GSMUA_Achr8P07950_001	Banana	mitochondrion	56.43	47.37
GSMUA_Achr6P09030_001	Banana	cytosol	52.66	46.41
GSMUA_Achr2P22940_001	Banana	cytosol	52.35	45.5
GSMUA_Achr1P11290_001	Banana	cytosol	57.68	45.32
GSMUA_Achr3P17440_001	Banana	cytosol	56.43	44.66
GSMUA_Achr8P32840_001	Banana	mitochondrion	56.74	44.04
GSMUA_Achr3P22480_001	Banana	cytosol	46.71	42.82
GSMUA_Achr9P29600_001	Banana	cytosol, mitochondrion	41.07	42.53
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	54.55	40.65
GSMUA_Achr11P...	Banana	cytosol	49.53	38.07
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	32.92	35.35
HORVU0Hr1G001350.2	Barley	cytosol	39.19	33.51
GSMUA_Achr2P23070_001	Banana	cytosol, mitochondrion	15.36	24.87
GSMUA_Achr10P...	Banana	nucleus	14.73	22.38
GSMUA_Achr1P10180_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.12	16.62

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01150_001	EnsemblPlants:GSMUA_Achr4T01150_001	EnsemblPlantsGene:GSMUA_Achr4G01150_001	Gene3D:3.20.90.10	InterPro:IPR025659	InterPro:Tubby-like_C
InterPro:Tubby_C	InterPro:Tubby_C_CS	PANTHER:PTHR16517	PANTHER:PTHR16517:SF50	PFAM:PF01167	PRINTS:PR01573
ScanProsite:PS01200	ScanProsite:PS01201	SEG:seg	SUPFAM:SSF54518	UniParc:UPI00029620BF	UniProt:M0SK32
MapMan:15.5.21	:	:	:	:	:

Description

Tubby-like F-box protein 9 [Source:GMGC_GENE;Acc:GSMUA_Achr4G01150_001]

Coordinates

chr4:+:934036..938620

Molecular Weight (calculated)

35637.6 Da

IEP (calculated)

10.055

GRAVY (calculated)

-0.409

Length

319 amino acids

Sequence
(BLAST)

001: MLPELLGEIV RRVEAGGERW PQRKDFVACA GACRRWREAA RAIVRPPCET GSITFPSSIK EPGPRDSPIQ CFIRRNKNNS TFYLYLGLTE SFTDKGKFLL
101: AARRFKHGAH TQYIISLDAD DLSQGSNAYI GKLRSNFFGT KFKIYDSRPP YNGAKVSSSR ASRRVASKQI SPQVPAGNFI IGQVSYKFNL LKRGPRRMHC
201: TLQCPSAAQD TTEEDSSKPK AHNPGVTILR NKAPRWHEHL QCWCLNFHGR VTVASVKNFQ LVATADASQP SGIGDEETVL LQFGKVGDDM FTMDFRQPLS
301: AFQAFAICLT SFGTKFACE

Best Arabidopsis Sequence Match ( AT1G53320.1 )
(BLAST)

001: MPLSRSLLSR RISNSFRFHQ GETTTAPESE SIPPPSNMAG SSSWSAMLPE LLGEIIRRVE ETEDRWPQRR DVVTCACVSK KWREITHDFA RSSLNSGKIT
101: FPSCLKLPGP RDFSNQCLIK RNKKTSTFYL YLALTPSFTD KGKFLLAARR FRTGAYTEYI ISLDADDFSQ GSNAYVGKLR SDFLGTNFTV YDSQPPHNGA
201: KPSNGKASRR FASKQISPQV PAGNFEVGHV SYKFNLLKSR GPRRMVSTLR CPSPSPSSSS AGLSSDQKPC DVTKIMKKPN KDGSSLTILK NKAPRWHEHL
301: QCWCLNFHGR VTVASVKNFQ LVATVDQSQP SGKGDEETVL LQFGKVGDDT FTMDYRQPLS AFQAFAICLT SFGTKLACE

Arabidopsis Description

TULP7Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A178WNG9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.