Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68112 | Canola | cytosol | 70.81 | 75.5 |
| CDX85931 | Canola | cytosol | 70.81 | 75.5 |
| CDY39073 | Canola | cytosol | 70.81 | 71.25 |
| CDY13521 | Canola | cytosol | 70.81 | 71.25 |
| AT1G75950.1 | Thale cress | cytosol | 70.81 | 71.25 |
| CDX87650 | Canola | cytosol | 67.7 | 67.7 |
| CDX73212 | Canola | cytosol | 67.08 | 67.08 |
| CDY40610 | Canola | cytosol | 59.63 | 61.54 |
| CDY40611 | Canola | cytosol | 57.14 | 61.33 |
| CDX93698 | Canola | cytosol | 59.01 | 60.9 |
| CDY44209 | Canola | cytosol | 60.87 | 60.87 |
| CDY29370 | Canola | cytosol | 59.63 | 59.63 |
| CDX93699 | Canola | cytosol | 57.76 | 58.12 |
| CDX77280 | Canola | cytosol | 53.42 | 54.09 |
| CDY01389 | Canola | cytosol | 54.04 | 54.04 |
| CDY67544 | Canola | cytosol | 53.42 | 53.42 |
| CDY63159 | Canola | cytosol | 53.42 | 53.42 |
| CDY16470 | Canola | cytosol | 51.55 | 52.2 |
| CDX89042 | Canola | cytosol | 51.55 | 52.2 |
| CDY45767 | Canola | cytosol | 48.45 | 50.65 |
| CDY69121 | Canola | cytosol | 40.99 | 50.38 |
| CDY43408 | Canola | cytosol | 47.2 | 50.0 |
| CDY68971 | Canola | cytosol | 46.58 | 49.34 |
| CDY17409 | Canola | cytosol | 48.45 | 49.06 |
| CDY04140 | Canola | cytosol | 48.45 | 49.06 |
| CDY03015 | Canola | cytosol | 43.48 | 46.36 |
| CDY14922 | Canola | cytosol | 47.2 | 45.24 |
| CDX96963 | Canola | cytosol | 46.58 | 39.68 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:A0A078CUV1 | EnsemblPlants:CDX80590 | ProteinID:CDX80590 | ProteinID:CDX80590.1 |
| GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00133717001 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniPathway:UPA00143 | UniParc:UPI0004EDEDBA | SEG:seg |
Description
BnaC07g28540D
Coordinates
chrLK031821:+:1505435..1507845
Molecular Weight (calculated)
18199.6 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.445
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRKKIVLKS SDGESFEVDE AADLESKTIA HMVEDDCVDN GVPLPNVTSE ILAKVIEYCK KHAKAAASKS EAVVFDERRR ISYCRGLGCS VYEIDQATLF
101: KLILAANYLN IKNLPDLTRH TVADMIKGKT PEEIHTTFNI ENDFTPEEEE EVRMENKRAF E
101: KLILAANYLN IKNLPDLTRH TVADMIKGKT PEEIHTTFNI ENDFTPEEEE EVRMENKRAF E
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.