Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 87.92 | 87.92 |
| AT4G21510.1 | Thale cress | cytosol | 54.59 | 50.22 |
| PGSC0003DMT400012930 | Potato | cytosol | 31.4 | 40.88 |
| Solyc03g006640.2.1 | Tomato | cytosol | 30.92 | 40.25 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 17.87 | 39.78 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 33.82 | 39.55 |
| KRH10756 | Soybean | cytosol | 21.74 | 39.47 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 28.02 | 39.46 |
| CDY16621 | Canola | nucleus | 32.37 | 39.41 |
| CDY44748 | Canola | nucleus | 32.37 | 39.41 |
| KRH49947 | Soybean | mitochondrion, plastid | 28.99 | 38.71 |
| PGSC0003DMT400029256 | Potato | plastid | 32.85 | 38.42 |
| KRH21571 | Soybean | cytosol | 28.02 | 38.16 |
| CDX97944 | Canola | mitochondrion | 27.05 | 38.1 |
| KRH41926 | Soybean | plastid | 28.5 | 38.06 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 31.4 | 37.79 |
| CDX90883 | Canola | nucleus | 32.37 | 37.64 |
| CDY21323 | Canola | nucleus | 31.88 | 37.08 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 28.99 | 36.36 |
| KRH21550 | Soybean | cytosol | 14.49 | 34.88 |
| CDY47573 | Canola | cytosol, mitochondrion | 29.95 | 34.44 |
| CDY15010 | Canola | mitochondrion, nucleus | 29.47 | 33.7 |
| KRH49741 | Soybean | mitochondrion | 25.6 | 32.72 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 19.32 | 31.25 |
| TraesCS2D01G211000.1 | Wheat | plastid | 24.64 | 31.1 |
| Os07t0561300-01 | Rice | plastid | 25.12 | 30.95 |
| CDY72037 | Canola | mitochondrion | 31.88 | 30.84 |
| TraesCS2B01G232500.1 | Wheat | plastid | 24.15 | 30.49 |
| HORVU2Hr1G040830.2 | Barley | plastid | 24.15 | 30.49 |
| TraesCS2A01G205100.1 | Wheat | plastid | 24.15 | 30.49 |
| Zm00001d021779_P001 | Maize | cytosol | 15.46 | 29.09 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 23.19 | 29.09 |
| KXG36477 | Sorghum | plastid | 23.19 | 28.24 |
| CDY03828 | Canola | mitochondrion | 30.43 | 27.75 |
| Zm00001d006591_P001 | Maize | plastid | 20.29 | 24.71 |
| CDY40953 | Canola | extracellular, golgi | 21.74 | 24.19 |
Protein Annotations
| EnsemblPlants:CDX82831 | EnsemblPlantsGene:GSBRNA2T00138179001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box_dom |
| InterPro:IPR001810 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PFscan:PS50181 | ProteinID:CDX82831 | ProteinID:CDX82831.1 |
| SEG:seg | UniParc:UPI0004EB3ACC | MapMan:35.1 | : | : | : |
Description
BnaC01g12810D
Coordinates
chrLK031830:-:603458..604504
Molecular Weight (calculated)
23430.1 Da
IEP (calculated)
9.571
GRAVY (calculated)
-0.364
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHYLHLIGE LWFCSVAKVA EWFLETIFLR NFLSGGGRTM KSKLDGEEEE LELGLGSVTF TRGLGRKRVL FSSRVRESLL EIPATESTPV KRQKSRTTNV
101: SLSSERSGLE SLPQELLIRV VCGVDHEDLK SLNIVSKSIR EASLIAKELH FSYTTPKKTR ASRNQLAFED SSQQVEDVEP PNAPVRHRWT KAKRKEELSN
201: VSVALFT
101: SLSSERSGLE SLPQELLIRV VCGVDHEDLK SLNIVSKSIR EASLIAKELH FSYTTPKKTR ASRNQLAFED SSQQVEDVEP PNAPVRHRWT KAKRKEELSN
201: VSVALFT
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Arabidopsis Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.