Factsheet for Zm00001d006591_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010625_P003
Zm00001d017475_P002
Zm00001d017649_P001
Zm00001d029988_P001
Zm00001d038513_P002
Zm00001d044874_P001
Zm00001d047069_P001
Zm00001d051484_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT1G61340.1	Zm00001d010625_P003	AT3G54190.1	21798944
AT1G61340.1	Zm00001d038513_P002	AT3G54190.1	21798944
AT1G61340.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT1G61340.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT1G61340.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT1G61340.1	Zm00001d051484_P001	AT4G17680.1	21798944
AT1G61340.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT1G61340.1	Zm00001d052194_P001	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36477	Sorghum	plastid	74.71	74.71
Zm00001d021779_P001	Maize	cytosol	44.12	68.18
HORVU2Hr1G040830.2	Barley	plastid	56.47	58.54
TraesCS2B01G232500.1	Wheat	plastid	55.88	57.93
TraesCS2A01G205100.1	Wheat	plastid	55.88	57.93
TraesCS2D01G211000.1	Wheat	plastid	55.29	57.32
Os07t0561300-01	Rice	plastid	52.94	53.57
GSMUA_Achr6P29300_001	Banana	cytosol	28.82	38.28
GSMUA_Achr9P02840_001	Banana	cytosol	32.94	33.94
KRH41926	Soybean	plastid	30.0	32.9
KRH49947	Soybean	mitochondrion, plastid	29.41	32.26
KRH21550	Soybean	cytosol	15.29	30.23
Solyc03g006640.2.1	Tomato	cytosol	28.24	30.19
PGSC0003DMT400012930	Potato	cytosol	28.24	30.19
VIT_00s0181g00080.t01	Wine grape	nucleus	30.0	29.65
KRH21571	Soybean	cytosol	26.47	29.61
CDY15010	Canola	mitochondrion, nucleus	30.59	28.73
CDY19351	Canola	cytosol, mitochondrion, nucleus	24.71	28.57
Solyc10g005480.2.1	Tomato	cytosol, plastid	29.41	28.25
KRH10756	Soybean	cytosol	18.82	28.07
PGSC0003DMT400057575	Potato	mitochondrion	15.29	27.96
AT1G61340.1	Thale cress	mitochondrion, nucleus	30.0	27.57
Solyc02g079150.1.1	Tomato	mitochondrion	26.47	27.27
Bra019871.1-P	Field mustard	mitochondrion	23.53	27.21
CDX97944	Canola	mitochondrion	23.53	27.21
PGSC0003DMT400029256	Potato	plastid	28.24	27.12
Bra038577.1-P	Field mustard	mitochondrion	24.12	25.95
AT4G05010.1	Thale cress	nucleus	24.71	25.61
Bra031435.1-P	Field mustard	cytosol, mitochondrion	27.06	25.56
CDY47573	Canola	cytosol, mitochondrion	27.06	25.56
CDY72037	Canola	mitochondrion	30.0	23.83
Bra000811.1-P	Field mustard	nucleus	24.12	23.03
CDY44748	Canola	nucleus	22.94	22.94
KRH49741	Soybean	mitochondrion	21.76	22.84
Bra029548.1-P	Field mustard	nucleus	22.35	22.35
CDY16621	Canola	nucleus	22.35	22.35
CDX90883	Canola	nucleus	22.35	21.35
CDY21323	Canola	nucleus	21.76	20.79
Bra013532.1-P	Field mustard	endoplasmic reticulum	25.29	20.77
CDX79068	Canola	endoplasmic reticulum, extracellular	25.29	20.77
CDY03828	Canola	mitochondrion	27.65	20.7
CDX82831	Canola	endoplasmic reticulum	24.71	20.29
AT4G21510.1	Thale cress	cytosol	25.88	19.56
CDY40953	Canola	extracellular, golgi	20.0	18.28

Protein Annotations

EnsemblPlants:Zm00001d006591_P001	EnsemblPlants:Zm00001d006591_T001	EnsemblPlantsGene:Zm00001d006591	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049
PANTHER:PTHR34049:SF1	PFAM:PF00646	ProteinID:ONM24325.1	SEG:seg	UniParc:UPI0003420826	UniProt:A0A1D6EY40
MapMan:35.2	:	:	:	:	:

Description

F-box domain containing protein

Coordinates

chr2:-:211745003..211746860

Molecular Weight (calculated)

18470.9 Da

IEP (calculated)

9.904

GRAVY (calculated)

-0.517

Length

170 amino acids

Sequence
(BLAST)

001: MAIGQGDEKK GSLARSLSCS NCGSGAIIFG RKRVAVSPTP GSRSPHSPTR TLRKQRSVRF HMEDDGVNLF NQLSLDVLVM IFCKVNHSDL RNLLLTSKSV
101: KEATILAREQ HFKFSTPPAK SGFRDEETGG GDDDDEGPGA PKQHRVARSR LGDTNLSSIA VNLSASFEQM

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.