CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX73499
CDX76163
CDX78216
CDX80590
CDX85931
CDX87650
CDX89437
CDX90458
CDY01389
CDY03368
CDY09609
CDY13190
CDY13521
CDY29370
CDY36901
CDY39073
CDY43408
CDY44209
CDY44976
CDY58069
CDY58070
CDY63159
CDY67544
CDY68971
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	CDY01389	AT1G20140.1	21798944
AT1G61340.1	CDY29370	AT1G20140.1	21798944
AT1G61340.1	CDY43408	AT1G20140.1	21798944
AT1G61340.1	CDY44209	AT1G20140.1	21798944
AT1G61340.1	CDY63159	AT1G20140.1	21798944
AT1G61340.1	CDY67544	AT1G20140.1	21798944
AT1G61340.1	CDY68971	AT1G20140.1	21798944
AT1G61340.1	CDX68112	AT1G75950.1	21798944
AT1G61340.1	CDX73212	AT1G75950.1	21798944
AT1G61340.1	CDX80590	AT1G75950.1	21798944
AT1G61340.1	CDX85931	AT1G75950.1	21798944
AT1G61340.1	CDX87650	AT1G75950.1	21798944
AT1G61340.1	CDY13521	AT1G75950.1	21798944
AT1G61340.1	CDY39073	AT1G75950.1	21798944
AT1G61340.1	CDY36901	AT3G48150.1	21798944
AT1G61340.1	CDY44976	AT3G48150.1	21798944
AT1G61340.1	CDY58069	AT3G48150.1	21798944
AT1G61340.1	CDY58070	AT3G48150.1	21798944
AT1G61340.1	CDY70805	AT3G48150.1	21798944
AT1G61340.1	CDX73499	AT3G54190.1	21798944
AT1G61340.1	CDX76163	AT3G54190.1	21798944
AT1G61340.1	CDX78216	AT3G54190.1	21798944
AT1G61340.1	CDY13190	AT3G54190.1	21798944
AT1G61340.1	CDX90458	AT4G17680.1	21798944
AT1G61340.1	CDY09609	AT4G17680.1	21798944
AT1G61340.1	CDX89437	AT4G25200.1	21798944
AT1G61340.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15010	Canola	mitochondrion, nucleus	39.78	40.88
AT1G61340.1	Thale cress	mitochondrion, nucleus	36.56	36.76
CDY47573	Canola	cytosol, mitochondrion	34.41	35.56
CDY72037	Canola	mitochondrion	40.32	35.05
CDX97944	Canola	mitochondrion	25.81	32.65
CDY19351	Canola	cytosol, mitochondrion, nucleus	25.81	32.65
CDY03828	Canola	mitochondrion	35.48	29.07
PGSC0003DMT400057575	Potato	mitochondrion	14.52	29.03
Solyc02g079150.1.1	Tomato	mitochondrion	23.12	26.06
CDY16621	Canola	nucleus	23.12	25.29
GSMUA_Achr9P02840_001	Banana	cytosol	22.04	24.85
CDY44748	Canola	nucleus	22.58	24.71
PGSC0003DMT400012930	Potato	cytosol	20.97	24.53
Solyc03g006640.2.1	Tomato	cytosol	20.97	24.53
Solyc10g005480.2.1	Tomato	cytosol, plastid	23.12	24.29
GSMUA_Achr6P29300_001	Banana	cytosol	16.67	24.22
CDX90883	Canola	nucleus	22.58	23.6
KRH49947	Soybean	mitochondrion, plastid	19.35	23.23
PGSC0003DMT400029256	Potato	plastid	22.04	23.16
CDY21323	Canola	nucleus	22.04	23.03
Zm00001d021779_P001	Maize	cytosol	13.44	22.73
KRH41926	Soybean	plastid	18.82	22.58
CDX82831	Canola	endoplasmic reticulum	24.19	21.74
KRH10756	Soybean	cytosol	12.9	21.05
KRH21550	Soybean	cytosol	9.68	20.93
CDX79068	Canola	endoplasmic reticulum, extracellular	23.12	20.77
KXG36477	Sorghum	plastid	18.28	20.0
Zm00001d006591_P001	Maize	plastid	18.28	20.0
KRH21571	Soybean	cytosol	16.13	19.74
Os07t0561300-01	Rice	plastid	17.74	19.64
HORVU2Hr1G040830.2	Barley	plastid	17.2	19.51
TraesCS2A01G205100.1	Wheat	plastid	17.2	19.51
TraesCS2B01G232500.1	Wheat	plastid	17.2	19.51
TraesCS2D01G211000.1	Wheat	plastid	17.2	19.51
KRH49741	Soybean	mitochondrion	16.13	18.52

Protein Annotations

EnsemblPlants:CDY40953	EnsemblPlantsGene:GSBRNA2T00072195001	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	ProteinID:CDY40953	ProteinID:CDY40953.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EE2C74	UniProt:A0A078HVY3	MapMan:35.1	:

Description

BnaCnng09960DBnaCnng09960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVY3]

Coordinates

chrLK032486:-:75413..76733

Molecular Weight (calculated)

21083.5 Da

IEP (calculated)

8.724

GRAVY (calculated)

-0.110

Length

186 amino acids

Sequence
(BLAST)

001: MFTFKWNMLM PGWVLYVVRS ITLCTSEACK RFELELVQYN KRGFGRKRIL VSSLADEIED SFFIGKISSK KLSDGQSQEL EDLPLDILII CGVEHEAALI
101: AKQSQVAYST PRKTSVFYHD LNKQFGLGVV NVDEIKAQRA PVQTRYRIFA DKPQQGRFWS LCCSVQLNQA IINSVSSTSL TEGKGF

Best Arabidopsis Sequence Match ( AT1G61340.1 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.