CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21323	Canola	nucleus	93.82	93.82
Bra000811.1-P	Field mustard	nucleus	83.15	83.15
AT4G05010.1	Thale cress	nucleus	56.18	60.98
CDY16621	Canola	nucleus	57.87	60.59
CDY44748	Canola	nucleus	56.18	58.82
CDY19351	Canola	cytosol, mitochondrion, nucleus	32.02	38.78
KRH10756	Soybean	cytosol	24.72	38.6
PGSC0003DMT400057575	Potato	mitochondrion	19.66	37.63
CDX97944	Canola	mitochondrion	30.34	36.73
Solyc03g006640.2.1	Tomato	cytosol	32.02	35.85
PGSC0003DMT400012930	Potato	cytosol	32.02	35.85
VIT_00s0181g00080.t01	Wine grape	nucleus	34.27	35.47
Solyc02g079150.1.1	Tomato	mitochondrion	32.02	34.55
PGSC0003DMT400029256	Potato	plastid	33.71	33.9
KRH21550	Soybean	cytosol	16.29	33.72
CDY47573	Canola	cytosol, mitochondrion	33.71	33.33
Solyc10g005480.2.1	Tomato	cytosol, plastid	33.15	33.33
CDY15010	Canola	mitochondrion, nucleus	33.71	33.15
KRH21571	Soybean	cytosol	28.09	32.89
CDX82831	Canola	endoplasmic reticulum	37.64	32.37
KRH49947	Soybean	mitochondrion, plastid	28.09	32.26
KRH41926	Soybean	plastid	27.53	31.61
CDX79068	Canola	endoplasmic reticulum, extracellular	34.83	29.95
GSMUA_Achr6P29300_001	Banana	cytosol	21.35	29.69
GSMUA_Achr9P02840_001	Banana	cytosol	26.97	29.09
Zm00001d021779_P001	Maize	cytosol	17.98	29.09
CDY72037	Canola	mitochondrion	33.71	28.04
CDY03828	Canola	mitochondrion	34.27	26.87
HORVU2Hr1G040830.2	Barley	plastid	24.16	26.22
TraesCS2D01G211000.1	Wheat	plastid	24.16	26.22
TraesCS2B01G232500.1	Wheat	plastid	24.16	26.22
TraesCS2A01G205100.1	Wheat	plastid	24.16	26.22
Os07t0561300-01	Rice	plastid	24.72	26.19
KXG36477	Sorghum	plastid	23.6	24.71
KRH49741	Soybean	mitochondrion	20.79	22.84
CDY40953	Canola	extracellular, golgi	23.6	22.58
Zm00001d006591_P001	Maize	plastid	21.35	22.35

Protein Annotations

EnsemblPlants:CDX90883	EnsemblPlantsGene:GSBRNA2T00151606001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646	PFscan:PS50181
ProteinID:CDX90883	ProteinID:CDX90883.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EE5778	MapMan:35.1

Description

BnaA03g25630D

Coordinates

chrLK031864:+:1082891..1084133

Molecular Weight (calculated)

20294.3 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.596

Length

178 amino acids

Sequence
(BLAST)

001: MALPNGEFEI SFSHGKLHGS DEEVVRLGFV RFTRGLRSKR ILFSKSNHET VSNSDLLDSP PVKMPLKRSK TEPSSSVLES LHQDILIRVL CHVDHDDLAR
101: LKRVSKTIRN AVFEAKKSHF DYSTPRKTLP FRDPTSILKQ DSSLSDQDDA MEPPNAPVRR RKINREADLS KISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.