Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G232500.1 | Wheat | plastid | 98.78 | 98.78 |
| TraesCS2A01G205100.1 | Wheat | plastid | 98.17 | 98.17 |
| HORVU2Hr1G040830.2 | Barley | plastid | 98.17 | 98.17 |
| Os07t0561300-01 | Rice | plastid | 71.34 | 69.64 |
| KXG36477 | Sorghum | plastid | 70.12 | 67.65 |
| Zm00001d021779_P001 | Maize | cytosol | 38.41 | 57.27 |
| Zm00001d006591_P001 | Maize | plastid | 57.32 | 55.29 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 31.1 | 39.84 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 39.63 | 39.39 |
| KRH41926 | Soybean | plastid | 36.59 | 38.71 |
| KRH49947 | Soybean | mitochondrion, plastid | 35.37 | 37.42 |
| KRH21571 | Soybean | cytosol | 32.32 | 34.87 |
| Solyc03g006640.2.1 | Tomato | cytosol | 32.32 | 33.33 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 34.76 | 33.14 |
| KRH21550 | Soybean | cytosol | 17.07 | 32.56 |
| PGSC0003DMT400012930 | Potato | cytosol | 31.1 | 32.08 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 30.49 | 30.3 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 17.07 | 30.11 |
| Bra019871.1-P | Field mustard | mitochondrion | 26.83 | 29.93 |
| CDX97944 | Canola | mitochondrion | 26.83 | 29.93 |
| KRH10756 | Soybean | cytosol | 20.73 | 29.82 |
| KRH49741 | Soybean | mitochondrion | 29.27 | 29.63 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 31.71 | 29.38 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 26.22 | 29.25 |
| PGSC0003DMT400029256 | Potato | plastid | 31.1 | 28.81 |
| CDY15010 | Canola | mitochondrion, nucleus | 31.71 | 28.73 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 31.71 | 28.11 |
| AT4G05010.1 | Thale cress | nucleus | 27.44 | 27.44 |
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 29.27 | 26.67 |
| CDY47573 | Canola | cytosol, mitochondrion | 29.27 | 26.67 |
| CDY44748 | Canola | nucleus | 26.83 | 25.88 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 32.32 | 25.6 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 32.32 | 25.6 |
| Bra038577.1-P | Field mustard | mitochondrion | 24.39 | 25.32 |
| Bra029548.1-P | Field mustard | nucleus | 25.61 | 24.71 |
| CDY16621 | Canola | nucleus | 25.61 | 24.71 |
| CDX82831 | Canola | endoplasmic reticulum | 31.1 | 24.64 |
| CDX90883 | Canola | nucleus | 26.22 | 24.16 |
| Bra000811.1-P | Field mustard | nucleus | 26.22 | 24.16 |
| CDY72037 | Canola | mitochondrion | 31.1 | 23.83 |
| CDY21323 | Canola | nucleus | 25.61 | 23.6 |
| AT4G21510.1 | Thale cress | cytosol | 32.32 | 23.56 |
| CDY03828 | Canola | mitochondrion | 29.88 | 21.59 |
| CDY40953 | Canola | extracellular, golgi | 19.51 | 17.2 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G211000.1 | EnsemblPlantsGene:TraesCS2D01G211000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box_dom |
| InterPro:IPR001810 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PFscan:PS50181 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr2D:-:168130416..168132118
Molecular Weight (calculated)
17604.3 Da
IEP (calculated)
10.258
GRAVY (calculated)
-0.174
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIGQTMPKG SLATSLSFPS SGSTRILGRK RVAVSPAPSP SGPHSPVRTL RKQRSIRFHM DDTICLLESL PQDVLVKVLC KVNHSDLRQL LLVSKPVSEA
101: TVVAKELHFA FATPSKASAD AEEEDDGPGA PKQHRVARSR CRGMNLASVA VNLSESFSSL MSEV
101: TVVAKELHFA FATPSKASAD AEEEDDGPGA PKQHRVARSR CRGMNLASVA VNLSESFSSL MSEV
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Arabidopsis Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.