Factsheet for Os07t0561300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0817800-01
Os02t0656300-01
Os02t0687500-01
Os02t0758000-01
Os05t0482600-01
Os06t0219500-00
Os06t0679100-00
Os10t0565500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Os02t0656300-01	AT3G48150.1	21798944
AT1G61340.1	Os06t0679100-00	AT3G48150.1	21798944
AT1G61340.1	Os01t0817800-01	AT3G54190.1	21798944
AT1G61340.1	Os05t0482600-01	AT3G54190.1	21798944
AT1G61340.1	Os02t0687500-01	AT4G17680.1	21798944
AT1G61340.1	Os10t0565500-01	AT4G17680.1	21798944
AT1G61340.1	Os02t0758000-01	AT4G25200.1	21798944
AT1G61340.1	Os06t0219500-00	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G211000.1	Wheat	plastid	69.64	71.34
TraesCS2B01G232500.1	Wheat	plastid	69.64	71.34
TraesCS2A01G205100.1	Wheat	plastid	69.64	71.34
HORVU2Hr1G040830.2	Barley	plastid	69.05	70.73
KXG36477	Sorghum	plastid	66.07	65.29
Zm00001d021779_P001	Maize	cytosol	37.5	57.27
Zm00001d006591_P001	Maize	plastid	53.57	52.94
KRH41926	Soybean	plastid	39.29	42.58
KRH49947	Soybean	mitochondrion, plastid	38.69	41.94
GSMUA_Achr6P29300_001	Banana	cytosol	29.17	38.28
GSMUA_Achr9P02840_001	Banana	cytosol	36.9	37.58
Solyc03g006640.2.1	Tomato	cytosol	33.33	35.22
PGSC0003DMT400012930	Potato	cytosol	32.14	33.96
KRH21571	Soybean	cytosol	30.36	33.55
PGSC0003DMT400057575	Potato	mitochondrion	18.45	33.33
KRH10756	Soybean	cytosol	22.02	32.46
KRH49741	Soybean	mitochondrion	30.95	32.1
VIT_00s0181g00080.t01	Wine grape	nucleus	32.14	31.4
Solyc02g079150.1.1	Tomato	mitochondrion	30.36	30.91
CDX97944	Canola	mitochondrion	26.79	30.61
Bra019871.1-P	Field mustard	mitochondrion	26.79	30.61
Solyc10g005480.2.1	Tomato	cytosol, plastid	30.95	29.38
PGSC0003DMT400029256	Potato	plastid	30.95	29.38
CDY19351	Canola	cytosol, mitochondrion, nucleus	25.6	29.25
KRH21550	Soybean	cytosol	14.88	29.07
AT4G05010.1	Thale cress	nucleus	27.38	28.05
CDY44748	Canola	nucleus	27.98	27.65
Bra029548.1-P	Field mustard	nucleus	27.38	27.06
CDY16621	Canola	nucleus	26.79	26.47
Bra013532.1-P	Field mustard	endoplasmic reticulum	32.14	26.09
CDX79068	Canola	endoplasmic reticulum, extracellular	32.14	26.09
Bra000811.1-P	Field mustard	nucleus	27.38	25.84
CDY15010	Canola	mitochondrion, nucleus	27.38	25.41
CDX82831	Canola	endoplasmic reticulum	30.95	25.12
AT4G21510.1	Thale cress	cytosol	33.33	24.89
CDY21323	Canola	nucleus	26.19	24.72
CDX90883	Canola	nucleus	26.19	24.72
AT1G61340.1	Thale cress	mitochondrion, nucleus	26.79	24.32
CDY47573	Canola	cytosol, mitochondrion	25.6	23.89
Bra031435.1-P	Field mustard	cytosol, mitochondrion	25.6	23.89
Bra038577.1-P	Field mustard	mitochondrion	21.43	22.78
CDY72037	Canola	mitochondrion	27.38	21.5
CDY03828	Canola	mitochondrion	26.19	19.38
CDY40953	Canola	extracellular, golgi	19.64	17.74

Protein Annotations

EMBL:AK072982	EnsemblPlants:Os07t0561300-01	EnsemblPlantsGene:Os07g0561300	EntrezGene:4343597	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181
PFscan:PS51257	ProteinID:BAC83377.1	ProteinID:BAD31160.1	ProteinID:BAF21899.1	ProteinID:BAT02138.1	ProteinID:EAZ40290.1
RefSeq:XP_015645738.1	SEG:seg	UniParc:UPI00001BF2E1	UniProt:Q6ZF52	MapMan:35.2	:

Description

F-box protein 396Cyclin-like F-box domain containing protein. (Os07t0561300-01)

Coordinates

chr7:-:22411227..22413069

Molecular Weight (calculated)

18154.9 Da

IEP (calculated)

10.599

GRAVY (calculated)

-0.227

Length

168 amino acids

Sequence
(BLAST)

001: MAIGQAKTKS SLSTSLSFSC SSTRILGRKR VAVSPAPPPS GGPHSPVRTL RKQRSTRLHM DDAVSLLESL PQDVLIKVLC KVNHSDLRPL LLVSKQVSEA
101: TVVAREQHFA FATPSSKAAL RGGEEEEEAP GAPKLQRRVA RSSPVWGKNL ASISVNLFEA FESEVVEM

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.