Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0325600-01 | |
| Os02t0748300-01 | |
| Os03t0171600-01 | |
| Os11t0602800-01 | |
| Os12t0182200-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G341100.1 | Wheat | nucleus, plastid | 86.12 | 87.08 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 86.12 | 87.08 |
| TraesCS3D01G334700.1 | Wheat | nucleus, plastid | 86.12 | 87.08 |
| Os05t0482600-01 | Rice | plastid | 83.7 | 83.52 |
| TraesCS3B01G373200.1 | Wheat | nucleus | 75.99 | 76.67 |
| CDX73499 | Canola | plastid | 74.01 | 74.34 |
| CDX78216 | Canola | plastid | 74.01 | 74.34 |
| PGSC0003DMT400013483 | Potato | plastid | 76.87 | 73.01 |
| CDX76163 | Canola | plastid | 73.13 | 72.97 |
| Solyc03g095260.2.1 | Tomato | plastid | 76.65 | 72.8 |
| AT2G38630.1 | Thale cress | plastid | 74.01 | 71.95 |
| AT3G54190.1 | Thale cress | plastid | 73.79 | 71.73 |
| Solyc06g048480.2.1 | Tomato | nucleus | 75.55 | 71.46 |
| Bra007053.1-P | Field mustard | plastid | 73.57 | 71.22 |
| KRH53685 | Soybean | nucleus, plastid | 74.67 | 70.92 |
| CDY13190 | Canola | plastid | 72.91 | 70.88 |
| VIT_08s0056g00230.t01 | Wine grape | plastid | 72.25 | 70.69 |
| KRH64247 | Soybean | nucleus, plastid | 74.67 | 70.62 |
| KRH72561 | Soybean | nucleus | 74.67 | 70.62 |
| Bra014834.1-P | Field mustard | plastid | 72.91 | 70.28 |
| KRH16944 | Soybean | plastid | 73.57 | 69.73 |
| VIT_13s0067g00100.t01 | Wine grape | plastid | 70.93 | 66.12 |
| KRH40628 | Soybean | plastid | 69.6 | 65.7 |
| KRH00534 | Soybean | plastid | 67.62 | 64.09 |
| Os12t0498300-01 | Rice | mitochondrion | 68.28 | 63.52 |
| KRH53714 | Soybean | cytosol | 34.8 | 61.24 |
| Os02t0781800-02 | Rice | cytosol | 33.04 | 58.82 |
| KRH40627 | Soybean | extracellular, plasma membrane | 30.18 | 52.09 |
| Os02t0159400-01 | Rice | nucleus | 8.81 | 13.33 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | EntrezGene:4327494 | EMBL:AK073827 | ProteinID:BAB62581.1 | ProteinID:BAD82295.1 |
| ProteinID:BAF06540.1 | ProteinID:BAS74938.1 | ProteinID:BAS74939.1 | ProteinID:EAZ13949.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015943 | EnsemblPlantsGene:Os01g0817800 | EnsemblPlants:Os01t0817800-01 | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF4 |
| UniProt:Q94DV6 | SUPFAM:SSF69322 | UniParc:UPI000009ED0F | InterPro:WD40/YVTN_repeat-like_dom_sf | RefSeq:XP_015613002.1 | SEG:seg |
Description
WD40 repeat-like domain containing protein. (Os01t0817800-01);Similar to predicted protein. (Os01t0817800-02)
Coordinates
chr1:-:34808265..34812170
Molecular Weight (calculated)
52202.4 Da
IEP (calculated)
8.770
GRAVY (calculated)
-0.390
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARRVSANP RPSCVRRVLA RKRRRPEATA NSARKLQRRE ISALPCRAFS ASTTRERFRN IQLQEEFDTH DPKEMGSLLP YLMKRSEIIE IVGASDIIFA
101: LSQSGVCAAF SRVSNQRICF LNGRPDEVIR SLFYNKNNDS LITVSVYGSE NFSALRCRTT RIEYIRRGKP DAGFPLFETE SLKWPGFVEF DDVNGKVLTY
201: SAQDSTYKVF DLKNYTLLYT ISDKNVQEIK ISPGIMLLIY SRKKGCIPLD ILSIEDGKRL KSFKHLLHRN KKVDFIEQFN EKLLIKQEGE NLQILDVRNF
301: QSIEVSRSEF VTPSAFIFLY EMQLFLTFRS RSVSVWNFRG ELVTSFEDHM LWHPDCNTNS IYITSNQDLI ISYCKADPND PSSEENACSI NISEILTGKC
401: LAKIKAGNLN KQRVSKFQST PSEALGDITA LYYDEEREEI YTGNRLGLVH VWSN
101: LSQSGVCAAF SRVSNQRICF LNGRPDEVIR SLFYNKNNDS LITVSVYGSE NFSALRCRTT RIEYIRRGKP DAGFPLFETE SLKWPGFVEF DDVNGKVLTY
201: SAQDSTYKVF DLKNYTLLYT ISDKNVQEIK ISPGIMLLIY SRKKGCIPLD ILSIEDGKRL KSFKHLLHRN KKVDFIEQFN EKLLIKQEGE NLQILDVRNF
301: QSIEVSRSEF VTPSAFIFLY EMQLFLTFRS RSVSVWNFRG ELVTSFEDHM LWHPDCNTNS IYITSNQDLI ISYCKADPND PSSEENACSI NISEILTGKC
401: LAKIKAGNLN KQRVSKFQST PSEALGDITA LYYDEEREEI YTGNRLGLVH VWSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.