CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53685	Soybean	nucleus, plastid	97.29	97.7
KRH72561	Soybean	nucleus	91.25	91.25
KRH16944	Soybean	plastid	91.04	91.23
PGSC0003DMT400013483	Potato	plastid	86.25	86.61
Solyc03g095260.2.1	Tomato	plastid	86.04	86.4
Solyc06g048480.2.1	Tomato	nucleus	85.42	85.42
Os05t0482600-01	Rice	plastid	78.54	82.86
EES18406	Sorghum	plastid	78.12	82.24
Zm00001d038513_P002	Maize	plastid	76.25	79.91
VIT_13s0067g00100.t01	Wine grape	plastid	81.04	79.88
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	74.79	78.9
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	74.79	78.9
HORVU1Hr1G069210.3	Barley	nucleus, plastid	74.17	78.24
TraesCS1B01G313700.1	Wheat	plastid	73.96	78.02
KRH53714	Soybean	cytosol	40.83	75.97
Zm00001d010625_P003	Maize	plastid	76.67	75.56
Os01t0817800-01	Rice	plastid	70.62	74.67
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.54	73.27
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.33	73.05
HORVU3Hr1G080560.3	Barley	nucleus, plastid	68.12	72.83
KRH40628	Soybean	plastid	72.08	71.93
KRH00534	Soybean	plastid	71.67	71.82
TraesCS3B01G373200.1	Wheat	nucleus	62.08	66.22
KRH40627	Soybean	extracellular, plasma membrane	32.5	59.32

Protein Annotations

EMBL:ACUP02002750	EnsemblPlants:KRH64247	EnsemblPlantsGene:GLYMA_04G224900	EntrezGene:100819305	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:KRH64247
ProteinID:KRH64247.1	SUPFAM:SSF69322	UniParc:UPI0002339C47	UniProt:I1JYE3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr4:+:49517979..49522505

Molecular Weight (calculated)

54897.2 Da

IEP (calculated)

8.559

GRAVY (calculated)

-0.392

Length

480 amino acids

Sequence
(BLAST)

001: MEGGRRITVS PRPCCGRRIV AAKKRPRAND GFVNSVKKLQ RREISSKRDR AFTMSDAQER FRNIRLQEEY DTHDPKGPSS MVLQFLRKRS KIIEIVAARD
101: IVFALAQSGV CAAFSRENNQ RICFLNVSAD EVIRSLFYNK NNDSLITVSV YASDSYSSLK CRSTRIEYIR RGTPDAGFAL FESESLKWPG FVEFDDVNGK
201: VLTYSAQDSI YKVFDLKNYT MLYSISDKNV QEIKISPGIM LLIYAKASSH VPLKILSIED GTVLKSFSHL LYRNKKVDFI EQFNEKLLVK QENENLQILD
301: VRTFEHTEVC RSEFMTPSAF IFLYENQLFL TFRNRTVAVW NFRGELVTSF EDHLLWHPDC NTNNIYITSD QDLIISYCKA DSDDSLSEGN AGSINVSNIL
401: TGKCLAKIRA SNSFPVDNNC SCSDKPSRSY CCNSKKRKHG SKMRSTVAEA LEDITALFYD EERNEIYTGN RLGLVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.