CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG92028
KRG99114
KRH34759
KRH34962
KRH45883
KRH70595
KRH70694
KRH74828
KRH75476

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	KRG99114	AT1G14330.1	21798944
AT3G54190.1	KRH45883	AT1G14330.1	21798944
AT3G54190.1	KRH70694	AT1G14330.1	21798944
AT3G54190.1	KRH74828	AT1G14330.1	21798944
AT3G54190.1	KRG92028	AT1G25550.1	21798944
AT3G54190.1	KRH34759	AT1G25550.1	21798944
AT3G54190.1	KRH70595	AT1G25550.1	21798944
AT3G54190.1	KRH75476	AT1G25550.1	21798944
AT3G54190.1	KRG91819	AT1G34430.1	21798944
AT3G54190.1	KRH34962	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40628	Soybean	plastid	90.4	90.02
CDX78216	Canola	plastid	73.49	77.88
CDX73499	Canola	plastid	73.28	77.65
AT3G54190.1	Thale cress	plastid	74.95	76.87
Bra007053.1-P	Field mustard	plastid	74.74	76.33
CDY13190	Canola	plastid	74.11	76.02
CDX76163	Canola	plastid	71.82	75.6
Bra014834.1-P	Field mustard	plastid	74.11	75.37
VIT_08s0056g00230.t01	Wine grape	plastid	72.65	75.0
EES18406	Sorghum	plastid	69.52	73.03
AT2G38630.1	Thale cress	plastid	71.19	73.02
Os05t0482600-01	Rice	plastid	69.1	72.75
KRH72561	Soybean	nucleus	72.86	72.71
KRH16944	Soybean	plastid	72.44	72.44
KRH53685	Soybean	nucleus, plastid	72.03	72.18
KRH64247	Soybean	nucleus, plastid	71.82	71.67
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	67.43	70.99
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	67.43	70.99
Zm00001d038513_P002	Maize	plastid	67.85	70.96
TraesCS1B01G313700.1	Wheat	plastid	67.22	70.77
HORVU1Hr1G069210.3	Barley	nucleus, plastid	67.01	70.55
Zm00001d010625_P003	Maize	plastid	68.89	67.76
Os01t0817800-01	Rice	plastid	64.09	67.62
KRH40627	Soybean	extracellular, plasma membrane	36.53	66.54
HORVU3Hr1G080560.3	Barley	nucleus, plastid	62.0	66.15
TraesCS3A01G341100.1	Wheat	nucleus, plastid	62.0	66.15
TraesCS3D01G334700.1	Wheat	nucleus, plastid	62.0	66.15
KRH53714	Soybean	cytosol	33.4	62.02
TraesCS3B01G373200.1	Wheat	nucleus	55.53	59.11

Protein Annotations

EMBL:ACUP02011452	EnsemblPlants:KRH00534	EnsemblPlantsGene:GLYMA_18G219000	EntrezGene:100803589	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	PANTHER:PTHR31789	ProteinID:KRH00534	ProteinID:KRH00534.1	SEG:seg	SUPFAM:SSF69322
UniParc:UPI000295D72D	UniProt:I1N3D3	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:50577209..50581396

Molecular Weight (calculated)

54721.8 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.398

Length

479 amino acids

Sequence
(BLAST)

001: MEGRRRGGYS GRRIVASRRG SGKSNANNNN NNNNKNNNNI NVIKKLQSRE IWSKPHRAFA SVTASHRFRS MCLTHQYDTH DPSKTPSSLW PFLMKRTKVV
101: EIVAAKNVVF ALYHSGLCAA FSRETDERIC FLNVCPDEII RSLFYNKNND SLITVSVYAS ENFSSLKCRS TKIEYLRRGK PDAGFPLFQS ESLKWPGFVE
201: FDDVNGKVLT YSAQDCIYKV FDLKNYTMLY SILDRNVQEI KISPGIMLLI YNRTSGHIPL KIISIEDGTV LKVFNHLLHR NKKVDFIEQF NEKLLVKQEN
301: ENLQILDVHN SELMEVSRTE FMTPSAFIFL YDNQLFLTFR NRTVSVWNFH GELVTSFEDH QLWHPDCNTN NIYITSDQDL IMSYCKADSD DQWIEGTAGS
401: INVSNILTGK CVAKIIATSS SAKADECSSS GCSCKQSDSC LMRNSVAEAL EDITALFYEE DRNEIYTGNR HGLVHVWSN

Best Arabidopsis Sequence Match ( AT2G38630.1 )
(BLAST)

001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.