CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81631
CDY03145
CDY12039
CDY20522
CDY33754
CDY33755
CDY49094
CDY51129
CDY62015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	CDX81631	AT1G14330.1	21798944
AT3G54190.1	CDY33754	AT1G14330.1	21798944
AT3G54190.1	CDY33755	AT1G14330.1	21798944
AT3G54190.1	CDY49094	AT1G14330.1	21798944
AT3G54190.1	CDY62015	AT1G14330.1	21798944
AT3G54190.1	CDY20522	AT1G25550.1	21798944
AT3G54190.1	CDY51129	AT1G25550.1	21798944
AT3G54190.1	CDY03145	AT1G34430.1	21798944
AT3G54190.1	CDY12039	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014834.1-P	Field mustard	plastid	99.36	98.51
CDX73499	Canola	plastid	94.43	97.57
CDX78216	Canola	plastid	94.22	97.35
CDX76163	Canola	plastid	94.0	96.48
AT3G54190.1	Thale cress	plastid	96.36	96.36
VIT_08s0056g00230.t01	Wine grape	plastid	84.8	85.34
EES18406	Sorghum	plastid	78.59	80.48
Os05t0482600-01	Rice	plastid	78.37	80.44
Zm00001d038513_P002	Maize	plastid	76.87	78.38
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	75.37	77.36
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	75.37	77.36
TraesCS1B01G313700.1	Wheat	plastid	74.95	76.92
HORVU1Hr1G069210.3	Barley	nucleus, plastid	74.73	76.7
KRH40628	Soybean	plastid	76.66	74.43
Zm00001d010625_P003	Maize	plastid	77.3	74.13
KRH00534	Soybean	plastid	76.02	74.11
Os01t0817800-01	Rice	plastid	70.88	72.91
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.95	71.71
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.74	71.49
HORVU3Hr1G080560.3	Barley	nucleus, plastid	68.52	71.27
TraesCS3B01G373200.1	Wheat	nucleus	62.74	65.11
KRH40627	Soybean	extracellular, plasma membrane	33.19	58.94

Protein Annotations

EnsemblPlants:CDY13190	EnsemblPlantsGene:GSBRNA2T00071065001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:CDY13190	ProteinID:CDY13190.1	SUPFAM:SSF69322
UniParc:UPI0004EDD275	UniProt:A0A078FFL8	MapMan:35.2	:	:	:

Description

BnaC04g26450DBnaC04g26450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFL8]

Coordinates

chrLK032032:-:278950..281298

Molecular Weight (calculated)

53448.5 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.386

Length

467 amino acids

Sequence
(BLAST)

001: MEGRRITASP RPCSGGRRVV AKKRPRPDGF VNSVKKLQRR EISSRKDRAF SINTAQERFR NMRLVEQYDT HDPKGHCLVA LPFLMKRTKV IEIVAARDIV
101: FALAHSGVCA AFSRETNRRI CFLNVSPDEV IRSLFYNKNN DSLITVSVYA SDNFSSLKCR STRIEYILRG QPDAGFALFE SESLKWPGFV EFDDVNGKVL
201: TYSAQDSVYK VFDLKNYTML YSISDKHVQE IKISPGIMLL IFKRASSHVP LKILSIEDGT VLKSFNHLLH RNKKVDFIEQ FNEKLLVKQE NENLQILDVR
301: TAEQMEVSRA EFMTPSAFIF LYENQLFLTF RNRNVSVWNF RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKADT EDQWIEGNAG SINISNILTG
401: KCLAKITSSS GPPKEDESSS SSLGTNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG FVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.