Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 1
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g03110.t01 | |
| VIT_01s0026g02080.t01 | |
| VIT_18s0072g01000.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54190.1 | VIT_01s0026g02080.t01 | AT1G14330.1 | 21798944 |
| AT3G54190.1 | VIT_01s0011g03110.t01 | AT1G25550.1 | 21798944 |
| AT3G54190.1 | VIT_18s0072g01000.t01 | AT1G34430.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73499 | Canola | plastid | 84.91 | 87.17 |
| CDX78216 | Canola | plastid | 84.91 | 87.17 |
| CDX76163 | Canola | plastid | 84.05 | 85.71 |
| Bra007053.1-P | Field mustard | plastid | 86.42 | 85.5 |
| AT3G54190.1 | Thale cress | plastid | 85.99 | 85.44 |
| CDY13190 | Canola | plastid | 85.34 | 84.8 |
| Bra014834.1-P | Field mustard | plastid | 85.56 | 84.29 |
| AT2G38630.1 | Thale cress | plastid | 83.62 | 83.08 |
| Os05t0482600-01 | Rice | plastid | 79.09 | 80.66 |
| EES18406 | Sorghum | plastid | 77.59 | 78.95 |
| TraesCS1D01G302800.1 | Wheat | mitochondrion, plastid | 75.86 | 77.36 |
| TraesCS1A01G303300.1 | Wheat | mitochondrion, plastid | 75.86 | 77.36 |
| TraesCS1B01G313700.1 | Wheat | plastid | 75.43 | 76.92 |
| Zm00001d038513_P002 | Maize | plastid | 75.86 | 76.86 |
| VIT_13s0067g00100.t01 | Wine grape | plastid | 80.39 | 76.59 |
| HORVU1Hr1G069210.3 | Barley | nucleus, plastid | 75.0 | 76.48 |
| Zm00001d010625_P003 | Maize | plastid | 77.59 | 73.92 |
| KRH40628 | Soybean | plastid | 76.08 | 73.39 |
| KRH00534 | Soybean | plastid | 75.0 | 72.65 |
| Os01t0817800-01 | Rice | plastid | 70.69 | 72.25 |
| TraesCS3D01G334700.1 | Wheat | nucleus, plastid | 68.75 | 71.05 |
| TraesCS3A01G341100.1 | Wheat | nucleus, plastid | 68.53 | 70.82 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 68.32 | 70.6 |
| TraesCS3B01G373200.1 | Wheat | nucleus | 61.42 | 63.33 |
| KRH40627 | Soybean | extracellular, plasma membrane | 33.62 | 59.32 |
Protein Annotations
| EntrezGene:100257044 | wikigene:100257044 | Gene3D:2.130.10.10 | MapMan:35.2 | EMBL:AM439445 | ProteinID:CAN60711 |
| ProteinID:CAN60711.1 | ProteinID:CAQ58624 | ProteinID:CAQ58624.1 | ProteinID:CBI31142 | ProteinID:CBI31142.3 | EMBL:CU914151 |
| ncoils:Coil | UniProt:D7TKX0 | EMBL:FN595995 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | EntrezGene:LOC100257044 | wikigene:LOC100257044 | PANTHER:PTHR31789 | SUPFAM:SSF69322 | UniParc:UPI00015CC429 |
| ArrayExpress:VIT_08s0056g00230 | EnsemblPlantsGene:VIT_08s0056g00230 | EnsemblPlants:VIT_08s0056g00230.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | RefSeq:XP_002266836 | RefSeq:XP_002266836.1 |
Description
No Description!
Coordinates
chr8:-:345237..355344
Molecular Weight (calculated)
53483.6 Da
IEP (calculated)
8.525
GRAVY (calculated)
-0.448
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRRISAIP RPCAGRRVSA SKKRPRVDGF LNSVKKLQRR EISSRRDRGF SISNAQERFR NMRLREEYDT HDPKGPYSPV LPFKRTKVIE IVAARDIVFA
101: LAHSGVCAAF SRETNERICF LNVSPDEVIR SLFYNKNNDS LITVSVYASD SFSSLKCRST RIEYIRRGKP EEGFALFESE SLKWPGFVEF DDVNGKVLTY
201: SAQDSIYKVF DLKNYVMLYS ISDENVQEIK ISPGIMLLIF NRATSHVPLK ILSIEDGTVL KDFNHLLHRN KKVDFIEQFN EKLLVKQENE NLQILDVRNT
301: ELKEVNRTEF MTPSAFIFLY ENQLFLTFRN RTVAVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSSD HWTEGNAGSI NISNILTGKC
401: LAKINASDGR PKVEERKRRR TGSSCMIRST VAEALEDITA LFYDEERNEI YTGNKNGLVH VWSN
101: LAHSGVCAAF SRETNERICF LNVSPDEVIR SLFYNKNNDS LITVSVYASD SFSSLKCRST RIEYIRRGKP EEGFALFESE SLKWPGFVEF DDVNGKVLTY
201: SAQDSIYKVF DLKNYVMLYS ISDENVQEIK ISPGIMLLIF NRATSHVPLK ILSIEDGTVL KDFNHLLHRN KKVDFIEQFN EKLLVKQENE NLQILDVRNT
301: ELKEVNRTEF MTPSAFIFLY ENQLFLTFRN RTVAVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSSD HWTEGNAGSI NISNILTGKC
401: LAKINASDGR PKVEERKRRR TGSSCMIRST VAEALEDITA LFYDEERNEI YTGNKNGLVH VWSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.