Factsheet for VIT_13s0067g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013483	Potato	plastid	83.16	84.73
Solyc03g095260.2.1	Tomato	plastid	82.96	84.52
Solyc06g048480.2.1	Tomato	nucleus	81.52	82.71
KRH72561	Soybean	nucleus	81.31	82.5
KRH53685	Soybean	nucleus, plastid	80.49	82.01
KRH16944	Soybean	plastid	80.29	81.63
KRH64247	Soybean	nucleus, plastid	79.88	81.04
VIT_08s0056g00230.t01	Wine grape	plastid	76.59	80.39
Os05t0482600-01	Rice	plastid	74.33	79.56
EES18406	Sorghum	plastid	73.51	78.51
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	71.05	76.04
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	71.05	76.04
TraesCS1B01G313700.1	Wheat	plastid	70.43	75.38
Zm00001d038513_P002	Maize	plastid	70.84	75.33
HORVU1Hr1G069210.3	Barley	nucleus, plastid	70.23	75.16
Zm00001d010625_P003	Maize	plastid	72.28	72.28
TraesCS3D01G334700.1	Wheat	nucleus, plastid	66.12	71.71
TraesCS3A01G341100.1	Wheat	nucleus, plastid	65.91	71.49
HORVU3Hr1G080560.3	Barley	nucleus, plastid	65.71	71.27
Os01t0817800-01	Rice	plastid	66.12	70.93
KRH53714	Soybean	cytosol	37.37	70.54
TraesCS3B01G373200.1	Wheat	nucleus	62.01	67.11

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	ProteinID:CCB49892	ProteinID:CCB49892.1	ncoils:Coil	UniProt:F6HCE7
EMBL:FN595514	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015943	PANTHER:PTHR31789
SUPFAM:SSF69322	TIGR:TC64062	UniParc:UPI0002108771	ArrayExpress:VIT_13s0067g00100	EnsemblPlantsGene:VIT_13s0067g00100	EnsemblPlants:VIT_13s0067g00100.t01
unigene:Vvi.226	InterPro:WD40/YVTN_repeat-like_dom_sf	RefSeq:XP_002266566	RefSeq:XP_002266566.1	RefSeq:XP_002266694	RefSeq:XP_002266694.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:83470..93622

Molecular Weight (calculated)

55581.9 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.246

Length

487 amino acids

Sequence
(BLAST)

001: MMEGKRISVS PRPGSGRRVV AKKRPRNDGF VNSVKKLQRR EICSKRDRSF SMSDAQERFR NIRLQEEYDT HDPKGHCTLV LPFLRKRSKI IEIVAARDIV
101: FALAQSGVCA AFSRETNQRI CFLNVSPDEV IRSLFYNKNN DSLITVSVYA SDNFSSLKCR TTRIEYIRRG KPDAGFALFE SESLKWPGFV EFDDVNGKVL
201: TYSAQDSIYK VFDLKNYTML YSISDKHVQE IKISPGIMLL IFTKASSHVP LKILSIEDGT VLKSFNHLLH RNKKVDFIEQ FNEKLLVKQE NENLQILDVR
301: NSELKEVSRT EFMTPSAFIF LYENQLFLTF RNRTVAVWNF RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKADS DDPLSEGNAG SINISNILTG
401: KCLAKIKASN NFPMENECSC SSNFSSSSSS IGNELMPLPL GLEARLQKPW KILLLFSMMK NAMRFILATG MAWSMYGPTD VCISLVL

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.