Factsheet for TraesCS3D01G334700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G116100.2
TraesCS2B01G135600.1
TraesCS2D01G119100.1
TraesCS4A01G016200.1
TraesCS4A01G487800.1
TraesCS4A01G489300.1
TraesCS4A01G489600.1
TraesCS4A01G491100.1
TraesCS4A01G492300.1
TraesCS4A01G493200.1
TraesCS4A01G493800.1
TraesCS4D01G286700.1
TraesCS5A01G119600.1
TraesCS5B01G116300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS6A01G306000.1
TraesCS6B01G334300.1
TraesCS6D01G285100.1
TraesCS7A01G004600.1
TraesCS7D01G005100.1
TraesCS7D01G007100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	TraesCS4A01G016200.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G487800.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G489300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G489600.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G491100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G492300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G493200.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G493800.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4D01G286700.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6A01G306000.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6B01G334300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6D01G285100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7A01G004600.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7D01G005100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7D01G007100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS2A01G116100.2	AT1G25550.1	21798944
AT3G54190.1	TraesCS2B01G135600.1	AT1G25550.1	21798944
AT3G54190.1	TraesCS2D01G119100.1	AT1G25550.1	21798944
AT3G54190.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5D01G126000.1	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G341100.1	Wheat	nucleus, plastid	99.78	99.78
HORVU3Hr1G080560.3	Barley	nucleus, plastid	97.77	97.77
TraesCS3B01G373200.1	Wheat	nucleus	86.41	86.22
Os01t0817800-01	Rice	plastid	87.08	86.12
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	79.96	78.9
CDX73499	Canola	plastid	72.38	71.9
CDX78216	Canola	plastid	72.38	71.9
PGSC0003DMT400013483	Potato	plastid	75.5	70.92
Solyc03g095260.2.1	Tomato	plastid	75.28	70.71
CDX76163	Canola	plastid	71.49	70.55
Solyc06g048480.2.1	Tomato	nucleus	75.06	70.21
KRH53685	Soybean	nucleus, plastid	73.94	69.46
AT2G38630.1	Thale cress	plastid	72.16	69.38
KRH72561	Soybean	nucleus	73.72	68.96
AT3G54190.1	Thale cress	plastid	71.71	68.95
CDY13190	Canola	plastid	71.71	68.95
Bra007053.1-P	Field mustard	plastid	71.94	68.87
VIT_08s0056g00230.t01	Wine grape	plastid	71.05	68.75
KRH64247	Soybean	nucleus, plastid	73.27	68.54
Bra014834.1-P	Field mustard	plastid	71.71	68.37
KRH16944	Soybean	plastid	72.61	68.06
VIT_13s0067g00100.t01	Wine grape	plastid	71.71	66.12
TraesCS5D01G116900.2	Wheat	mitochondrion, nucleus	68.15	63.49
KRH40628	Soybean	plastid	67.71	63.2
KRH00534	Soybean	plastid	66.15	62.0
KRH53714	Soybean	cytosol	34.08	59.3
KRH40627	Soybean	extracellular, plasma membrane	29.84	50.95

Protein Annotations

EnsemblPlants:TraesCS3D01G334700.1	EnsemblPlantsGene:TraesCS3D01G334700	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	PANTHER:PTHR31789:SF4	SUPFAM:SSF69322	MapMan:35.2

Description

No Description!

Coordinates

chr3D:-:446848191..446852775

Molecular Weight (calculated)

51619.5 Da

IEP (calculated)

7.928

GRAVY (calculated)

-0.408

Length

449 amino acids

Sequence
(BLAST)

001: MEARPRPSGV RRVTAKKRPR PDASSNSARK LQRREIAAFP ERTFAASTTR ERFRNIQLQE EFDTYDPKEN SSLLPYLRKR SEIIEIVGAR DIIFALSQLG
101: VCAAFSRVTN QRICFLNGSP DEVIRSLFYN KNNDSLITVS VYGSENFSAL RCRTTRIEYI RRGKPDAGFP LFETESLRWP GFVEFDDVNG KVLTYSAQDS
201: TYKVFDLKNY TLLYTISDKD VQEIKISPGI MLLIYSRKKG YIPLEILSIE DGKRLKSFRH LLHRNKKIDF IEQFNEKLLV KQDGENLQIL DVTNSKITEV
301: SSNEFVTPSA FIFLYEMQLF LTFRNRSVSV WNFRGELVTS FEDHLLWHPD CNTNSIYITS NQDLIISYCK AEPDDPSSED NACSINISDI LTGKCMAKIK
401: AGNLCKQKSS KFLCTPLEAL GDITSLYYDE EREEIITGNH QGLIHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.