Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G107600.1 | Wheat | mitochondrion | 98.76 | 98.76 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 98.76 | 98.76 |
| HORVU5Hr1G035370.20 | Barley | cytosol | 81.33 | 91.8 |
| EES16005 | Sorghum | mitochondrion, nucleus | 87.76 | 87.58 |
| Os12t0498300-01 | Rice | mitochondrion | 86.93 | 85.86 |
| Zm00001d023762_P001 | Maize | mitochondrion | 85.27 | 85.09 |
| Zm00001d041759_P002 | Maize | cytosol, mitochondrion | 82.37 | 78.3 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 75.1 | 75.89 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 74.9 | 75.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 74.69 | 75.63 |
| TraesCS1D01G302800.1 | Wheat | mitochondrion, plastid | 64.52 | 68.35 |
| TraesCS3D01G334700.1 | Wheat | nucleus, plastid | 63.49 | 68.15 |
| OQU79156 | Sorghum | cytosol | 22.41 | 65.45 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 65.35 | 57.69 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G116900.2 | EnsemblPlantsGene:TraesCS5D01G116900 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF2 | SEG:seg | SUPFAM:SSF69322 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:138467621..138472638
Molecular Weight (calculated)
54317.8 Da
IEP (calculated)
7.587
GRAVY (calculated)
-0.278
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPKRSQLR VRLRVTARRR GGDGADRAGP GGGTGGERKR RLDAPLINSA AKLQRREIGG RQLAARGGGA AAAVPERFRN MQLQEEFDTY DHDAHLFVKL
101: QFLKKRSKII EIVAAKDIIF ALAHSGLCAA FSRVTNKRLS FLNLSPDEVI RSLFYNKNND SLITVSVYAS DHFSTLKCRT TPIEYIRRDQ LDAGFPLFES
201: ESLKWPGFVE FDDVNGKVLT YSAQDGIYKV FDLKNYSFLY SIPDTNVQEI KISPGIMLLI YDRTPSYVPL KILSIEDGKP LKLFKHLLHR GKKIDFIEQF
301: NEKLLVKQED ENLQILDVRS SELIEISIEK FMTPSAFIFL YENNLFLTFR NRTVAVWNFR GELVTSFEDH LLWHQDCSTN NIYITTDQDL IISYCKSNAA
401: ADDGTASSIG SINMSDIMTG KCIAKIAAND PALSIAPRKN GSPSIWSSIP EALEDVTALF YDEDRNEIYT GNSQGLVHVW SS
101: QFLKKRSKII EIVAAKDIIF ALAHSGLCAA FSRVTNKRLS FLNLSPDEVI RSLFYNKNND SLITVSVYAS DHFSTLKCRT TPIEYIRRDQ LDAGFPLFES
201: ESLKWPGFVE FDDVNGKVLT YSAQDGIYKV FDLKNYSFLY SIPDTNVQEI KISPGIMLLI YDRTPSYVPL KILSIEDGKP LKLFKHLLHR GKKIDFIEQF
301: NEKLLVKQED ENLQILDVRS SELIEISIEK FMTPSAFIFL YENNLFLTFR NRTVAVWNFR GELVTSFEDH LLWHQDCSTN NIYITTDQDL IISYCKSNAA
401: ADDGTASSIG SINMSDIMTG KCIAKIAAND PALSIAPRKN GSPSIWSSIP EALEDVTALF YDEDRNEIYT GNSQGLVHVW SS
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.