CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023762_P001	Maize	mitochondrion	94.62	94.62
TraesCS5D01G116900.2	Wheat	mitochondrion, nucleus	87.58	87.76
TraesCS5A01G107600.1	Wheat	mitochondrion	86.96	87.14
TraesCS5B01G109800.2	Wheat	nucleus	86.96	87.14
Os12t0498300-01	Rice	mitochondrion	85.92	85.04
HORVU5Hr1G035370.20	Barley	cytosol	73.29	82.9
GSMUA_Achr5P05140_001	Banana	nucleus	75.57	76.52
GSMUA_Achr1P21860_001	Banana	cytosol	75.16	76.26
GSMUA_AchrUn_...	Banana	nucleus	74.95	76.05
EES18406	Sorghum	plastid	67.49	71.49
OQU79156	Sorghum	cytosol	22.98	67.27
EES07638	Sorghum	mitochondrion	67.08	66.26
GSMUA_Achr3P05870_001	Banana	cytosol	64.8	57.33
OQU76005	Sorghum	nucleus	12.22	31.38

Protein Annotations

EnsemblPlants:EES16005	EnsemblPlantsGene:SORBI_3008G101800	EntrezGene:8064092	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	PANTHER:PTHR31789:SF2	ProteinID:EES16005
ProteinID:EES16005.1	RefSeq:XP_002442167.1	SEG:seg	SUPFAM:SSF69322	unigene:Sbi.7103	UniParc:UPI0001A882D3
UniProt:C5YNV4	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:48449907..48453966

Molecular Weight (calculated)

54644.2 Da

IEP (calculated)

8.192

GRAVY (calculated)

-0.296

Length

483 amino acids

Sequence
(BLAST)

001: MDGPKRSQLR VRLRVTARRR GADGDGAGGA AGPGGRKRRM EAPVLNSAAK LQRREIGGRQ LAARGGGPAA AVPERFRNMQ LQEEFDTYDA NAHLFVKLQF
101: LKRRSKIIEI VAAKDIIFAL ANSGLCAAFN RVTNKRIAFL NLSPDEVIRS LFYNKNNDSL ITVSVYASDN FSTLKCRTTP IEYIRRNQLD AGFPLFESES
201: LKWPGFVEFD DVNGKVLTYS AQDGIYKVFD LKNYSFLYSI PDENVQEIKI SPGIMLLIYD RTPSYVPLKI LSIEDGKPLK SFKHLLHRNK KIDFIEQFNE
301: KLLVKQEDEN FQILDVRSSE LIEVSVSKFM TPSAFIFLYE NNLFLTFRNR TVAVWNFRGE LVTSFEDHLL WHHDCSTNNI YITSDQDLII SYCKSEAVAE
401: DGTVIPVGSI NMSEIMTGKC IAKITANDPA LSVAPHRNDR SKRSLGWSTV PEALEDVTAL FYDEDRNEIY TGNSHGLVHV WSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.