Factsheet for GSMUA_Achr3P05870_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P05140_001	Banana	nucleus	66.3	75.89
GSMUA_AchrUn_...	Banana	nucleus	61.9	71.01
GSMUA_Achr1P21860_001	Banana	cytosol	61.36	70.38
HORVU5Hr1G035370.20	Barley	cytosol	53.66	68.62
Os02t0781800-02	Rice	cytosol	30.95	66.27
Os12t0498300-01	Rice	mitochondrion	59.16	66.19
TraesCS5D01G116900.2	Wheat	mitochondrion, nucleus	57.69	65.35
TraesCS5B01G109800.2	Wheat	nucleus	57.69	65.35
TraesCS5A01G107600.1	Wheat	mitochondrion	57.51	65.15
EES16005	Sorghum	mitochondrion, nucleus	57.33	64.8
EES07638	Sorghum	mitochondrion	57.88	64.62
Zm00001d023762_P001	Maize	mitochondrion	56.78	64.18
Zm00001d041759_P002	Maize	cytosol, mitochondrion	56.41	60.75
TraesCS6B01G371900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	53.48	59.84
HORVU6Hr1G082150.2	Barley	mitochondrion	52.93	59.47
OQU79156	Sorghum	cytosol	17.4	57.58
Zm00001d018291_P002	Maize	cytosol, mitochondrion, nucleus, plastid	56.96	52.01

Protein Annotations

EnsemblPlants:GSMUA_Achr3P05870_001	EnsemblPlants:GSMUA_Achr3T05870_001	EnsemblPlantsGene:GSMUA_Achr3G05870_001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	PANTHER:PTHR31789:SF2	SEG:seg
SUPFAM:SSF69322	UniParc:UPI000295845C	UniProt:M0SC55	MapMan:35.2	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G05870_001]

Coordinates

chr3:+:3957944..3962379

Molecular Weight (calculated)

62107.2 Da

IEP (calculated)

6.205

GRAVY (calculated)

-0.213

Length

546 amino acids

Sequence
(BLAST)

001: MMMIIWFHLT DRGYDGKYVL LGDTNARNRR IEEATSKATA FVDSSSPLSP FSPTDGALGN RNPSFDPYPR SDQPLAFPSR FWSSVLEAVA AEERCARAGG
101: EIVRSREIGR FARMARVTAT GVPEKFQSIQ LQEEFDTFDC DVHMFPDLQY LKKRSKIIEI VSVKDVIFVV AQSGLCAAFS RTTNKRICFL NISPGEIIRS
201: IFYNKNDESL ITVSVYASDH FSSLKCRTTP IEYIRRNQLD AGCPLFETES IKWPGFVEFC DMNCKILIYS SQDGTYKVFD LKNYSLLYSI CDKDIVDIKI
301: SPSMMLLVYQ RTLGHVPLKI LSIEDGKVLK SFNHSLHRNK KVDFIEQFNE KLLLKQENEN LQILDVWNSD LIEVSRTEFM TPSAFIFLYE KHLFLTFRNR
401: TVAVWNVRGE PVASFEDHLL WHPDCNTNNI YITTDLDLII SYCKAENVCH DEGEVPSVGS INVGDILTGK CIAKICPLDP HLQIGPRKRG DAGRSTIGST
501: IKEALENVTA LFYDEDRNEI YTGNEQGLVH VWSKPHISRD NLPACL

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.