Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 83.23 | 83.4 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 82.6 | 82.77 |
| Os12t0498300-01 | Rice | mitochondrion | 79.66 | 77.87 |
| HORVU5Hr1G035370.20 | Barley | cytosol | 68.76 | 76.81 |
| EES16005 | Sorghum | mitochondrion, nucleus | 76.52 | 75.57 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 76.1 | 75.31 |
| TraesCS5D01G116900.2 | Wheat | mitochondrion, nucleus | 75.89 | 75.1 |
| TraesCS5A01G107600.1 | Wheat | mitochondrion | 75.89 | 75.1 |
| Zm00001d023762_P001 | Maize | mitochondrion | 75.68 | 74.74 |
| Os02t0781800-02 | Rice | cytosol | 38.78 | 72.55 |
| EES07638 | Sorghum | mitochondrion | 72.75 | 70.96 |
| Zm00001d041759_P002 | Maize | cytosol, mitochondrion | 74.21 | 69.82 |
| TraesCS6B01G371900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 70.23 | 68.65 |
| HORVU6Hr1G082150.2 | Barley | mitochondrion | 69.81 | 68.52 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 75.89 | 66.3 |
| OQU79156 | Sorghum | cytosol | 22.22 | 64.24 |
| Zm00001d018291_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 71.28 | 56.86 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P05140_001 | EnsemblPlants:GSMUA_Achr5T05140_001 | EnsemblPlantsGene:GSMUA_Achr5G05140_001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF2 | SUPFAM:SSF69322 |
| UniParc:UPI000296099E | UniProt:M0SVU3 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G05140_001]
Coordinates
chr5:+:3812137..3816810
Molecular Weight (calculated)
55251.1 Da
IEP (calculated)
8.456
GRAVY (calculated)
-0.437
Length
477 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHKKSTLR LRLRVTARKK GRELIPGECS DRKRRERECP NSVRKLQRRE IGGFPRLARG TATGAPEKFR NIQLQEEFDT YDHNVHWFLK LQFLKKRSKI
101: IEIVAAKDVI FALAQSGLCA AFSRTTNKRI CFLNISPDEV IRSLFYNKNN DSLITVSVYA SDHFSSLKCR TTPIEYIRRN QLDAGYPLFE SESLKWPGFV
201: EFDDVNGKVL TYSAQDGTYK VFDLKNYSFL YSICDKDIQE IKISPGIMLL IYQRTQSHVP LKILSIEDGK VLKSFNHLLH RNKKVDFIEQ FNEKLLVKQE
301: NENLQILDVR NSNLIEVSRT EFMTPSAFIF LYENHLFLTF RNRTVAVWNF RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKAED GCDEEGEVPT
401: VGSINMSNIL TGKCIAKICP LDPALQITPR KRGDNSRSTI RSTIREALED VTALFYDEDR NEIYTGNKQG LIHVWSN
101: IEIVAAKDVI FALAQSGLCA AFSRTTNKRI CFLNISPDEV IRSLFYNKNN DSLITVSVYA SDHFSSLKCR TTPIEYIRRN QLDAGYPLFE SESLKWPGFV
201: EFDDVNGKVL TYSAQDGTYK VFDLKNYSFL YSICDKDIQE IKISPGIMLL IYQRTQSHVP LKILSIEDGK VLKSFNHLLH RNKKVDFIEQ FNEKLLVKQE
301: NENLQILDVR NSNLIEVSRT EFMTPSAFIF LYENHLFLTF RNRTVAVWNF RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKAED GCDEEGEVPT
401: VGSINMSNIL TGKCIAKICP LDPALQITPR KRGDNSRSTI RSTIREALED VTALFYDEDR NEIYTGNKQG LIHVWSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.