Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G082150.2 | Barley | mitochondrion | 96.11 | 96.5 |
| EES07638 | Sorghum | mitochondrion | 83.2 | 83.03 |
| Os02t0781800-02 | Rice | cytosol | 43.24 | 82.75 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 68.65 | 70.23 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.39 | 68.07 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 65.16 | 66.81 |
| Zm00001d018291_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 81.15 | 66.22 |
| TraesCS1B01G313700.1 | Wheat | plastid | 61.07 | 65.49 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 62.91 | 63.69 |
| TraesCS3B01G373200.1 | Wheat | nucleus | 52.46 | 56.89 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 59.84 | 53.48 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G371900.1 | EnsemblPlantsGene:TraesCS6B01G371900 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF3 | SEG:seg | SUPFAM:SSF69322 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:645533068..645537836
Molecular Weight (calculated)
56063.5 Da
IEP (calculated)
8.035
GRAVY (calculated)
-0.480
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHHHHHHHK AGVRGRLRVT AARRRAWQQQ SACCKRPARR DPVDTVRKFM RREIGGGHRR PPRPAAPSTS AFSCPEKFRN FQLQEEYDTY DDPFVQLPLA
101: WNRRRIIEIV AARDLIFALA ECGLCGAFNR TTNKRICHLN ISPDEVIRSL FYNKNNDSLI TVSVYESDRY SSLKCRTTPI EYIRRGQLHD GFPLFETESL
201: KYPGFVEFDD VNGKVLTFSA HDSTYKVFDL KNYNFLYSIC DKDIQEIKIS PGIMLVIYQK ASNHVPLKIL SIEDGTTLKT FTQLLHRNRK VDFIEQFNEK
301: LLVKQDKENL QIIDVRNSGL IEVNKTEFMT PSAFIFLYEN NLFLTFCNRT VAAWNFRGEL VTSFDDHELW HPNCNTNNIY ITADQDLIIS YCKVSGGGTN
401: DADDEGQEGS RMGSINMSNI FTGKCVAKIS ALDPTLMIAP RRKGDTSRST IRSSVSDALE DITALFYDED RNEIYTGNSR GLVHVWSN
101: WNRRRIIEIV AARDLIFALA ECGLCGAFNR TTNKRICHLN ISPDEVIRSL FYNKNNDSLI TVSVYESDRY SSLKCRTTPI EYIRRGQLHD GFPLFETESL
201: KYPGFVEFDD VNGKVLTFSA HDSTYKVFDL KNYNFLYSIC DKDIQEIKIS PGIMLVIYQK ASNHVPLKIL SIEDGTTLKT FTQLLHRNRK VDFIEQFNEK
301: LLVKQDKENL QIIDVRNSGL IEVNKTEFMT PSAFIFLYEN NLFLTFCNRT VAAWNFRGEL VTSFDDHELW HPNCNTNNIY ITADQDLIIS YCKVSGGGTN
401: DADDEGQEGS RMGSINMSNI FTGKCVAKIS ALDPTLMIAP RRKGDTSRST IRSSVSDALE DITALFYDED RNEIYTGNSR GLVHVWSN
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.