Factsheet for TraesCS1B01G313700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G116100.2
TraesCS2B01G135600.1
TraesCS2D01G119100.1
TraesCS4A01G016200.1
TraesCS4A01G487800.1
TraesCS4A01G489300.1
TraesCS4A01G489600.1
TraesCS4A01G491100.1
TraesCS4A01G492300.1
TraesCS4A01G493200.1
TraesCS4A01G493800.1
TraesCS4D01G286700.1
TraesCS5A01G119600.1
TraesCS5B01G116300.1
TraesCS5D01G125900.1
TraesCS5D01G126000.1
TraesCS6A01G306000.1
TraesCS6B01G334300.1
TraesCS6D01G285100.1
TraesCS7A01G004600.1
TraesCS7D01G005100.1
TraesCS7D01G007100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	TraesCS4A01G016200.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G487800.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G489300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G489600.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G491100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G492300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G493200.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4A01G493800.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS4D01G286700.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6A01G306000.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6B01G334300.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS6D01G285100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7A01G004600.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7D01G005100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS7D01G007100.1	AT1G14330.1	21798944
AT3G54190.1	TraesCS2A01G116100.2	AT1G25550.1	21798944
AT3G54190.1	TraesCS2B01G135600.1	AT1G25550.1	21798944
AT3G54190.1	TraesCS2D01G119100.1	AT1G25550.1	21798944
AT3G54190.1	TraesCS5A01G119600.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5B01G116300.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5D01G125900.1	AT1G34430.1	21798944
AT3G54190.1	TraesCS5D01G126000.1	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	98.68	98.68
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	98.68	98.68
HORVU1Hr1G069210.3	Barley	nucleus, plastid	96.26	96.26
EES18406	Sorghum	plastid	90.99	90.79
Os05t0482600-01	Rice	plastid	90.11	90.11
Zm00001d038513_P002	Maize	plastid	89.01	88.43
Zm00001d010625_P003	Maize	plastid	90.33	84.39
CDX73499	Canola	plastid	77.58	78.1
CDX78216	Canola	plastid	77.58	78.1
PGSC0003DMT400013483	Potato	plastid	80.44	76.57
Solyc03g095260.2.1	Tomato	plastid	80.22	76.36
CDX76163	Canola	plastid	76.04	76.04
VIT_08s0056g00230.t01	Wine grape	plastid	76.92	75.43
AT3G54190.1	Thale cress	plastid	77.36	75.37
CDY13190	Canola	plastid	76.92	74.95
Solyc06g048480.2.1	Tomato	nucleus	78.9	74.79
KRH53685	Soybean	nucleus, plastid	78.46	74.69
Bra007053.1-P	Field mustard	plastid	76.92	74.63
KRH16944	Soybean	plastid	78.46	74.53
KRH72561	Soybean	nucleus	78.46	74.38
AT2G38630.1	Thale cress	plastid	76.26	74.3
KRH64247	Soybean	nucleus, plastid	78.02	73.96
Bra014834.1-P	Field mustard	plastid	76.26	73.67
TraesCS3B01G373200.1	Wheat	nucleus	69.67	70.44
VIT_13s0067g00100.t01	Wine grape	plastid	75.38	70.43
KRH00534	Soybean	plastid	70.77	67.22
KRH40628	Soybean	plastid	70.99	67.15
TraesCS5B01G109800.2	Wheat	nucleus	68.79	64.94
KRH53714	Soybean	cytosol	36.48	64.34
TraesCS6B01G371900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	65.49	61.07
KRH40627	Soybean	extracellular, plasma membrane	31.21	53.99

Protein Annotations

EnsemblPlants:TraesCS1B01G313700.1	EnsemblPlantsGene:TraesCS1B01G313700	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	SEG:seg	SUPFAM:SSF69322	MapMan:35.2

Description

No Description!

Coordinates

chr1B:+:537691305..537694727

Molecular Weight (calculated)

52493.4 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.392

Length

455 amino acids

Sequence
(BLAST)

001: MEARRISATP RPCNGRRVVA RKRPRQEAVI SSVRKLQRRE ISSRRERSFA MNSAKERFRN IQLQEEFDTH DPKENNVLLP YIRKRSKIIE IVAARDIVFA
101: LSQSGVCAAF SRVTNKRICF LNGSPDEVVR SLFYNKNNDS LITVSVYGSE NFSALRCKTT RIEYIRRGTP DAGFPLFETE SLKWPGFVEF DDVNGKVLTY
201: SAQDSTYKVF DLKNYTLLYS ISDKNVQEIK ISPGIMLLIY TRTSSSIPLK ILNIEDGTVL KFFNHLLHRN KKVDFIEQFN EKLLVKQDGE NLQILDVRNF
301: QLTEVSSTEF MTPSAFIFLY ELQLFLTFRN RSVAVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSTD SSSEENAGSI NISNILTGKC
401: LAKIKAGNFN EQKKTWKFQN TITEALEDIT ALYYDEERDE IYTGNCHGLV HVWAN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.