CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81631
CDY03145
CDY12039
CDY20522
CDY33754
CDY33755
CDY49094
CDY51129
CDY62015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	CDX81631	AT1G14330.1	21798944
AT3G54190.1	CDY33754	AT1G14330.1	21798944
AT3G54190.1	CDY33755	AT1G14330.1	21798944
AT3G54190.1	CDY49094	AT1G14330.1	21798944
AT3G54190.1	CDY62015	AT1G14330.1	21798944
AT3G54190.1	CDY20522	AT1G25550.1	21798944
AT3G54190.1	CDY51129	AT1G25550.1	21798944
AT3G54190.1	CDY03145	AT1G34430.1	21798944
AT3G54190.1	CDY12039	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78216	Canola	plastid	99.78	99.78
CDX76163	Canola	plastid	95.58	94.95
Bra007053.1-P	Field mustard	plastid	98.45	94.88
CDY13190	Canola	plastid	97.57	94.43
AT3G54190.1	Thale cress	plastid	96.9	93.79
VIT_08s0056g00230.t01	Wine grape	plastid	87.17	84.91
EES18406	Sorghum	plastid	82.08	81.36
Os05t0482600-01	Rice	plastid	81.42	80.88
Zm00001d038513_P002	Maize	plastid	80.53	79.48
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	78.54	78.02
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	78.54	78.02
TraesCS1B01G313700.1	Wheat	plastid	78.1	77.58
HORVU1Hr1G069210.3	Barley	nucleus, plastid	77.65	77.14
Zm00001d010625_P003	Maize	plastid	80.97	75.15
Os01t0817800-01	Rice	plastid	74.34	74.01
KRH40628	Soybean	plastid	78.1	73.39
KRH00534	Soybean	plastid	77.65	73.28
TraesCS3D01G334700.1	Wheat	nucleus, plastid	71.9	72.38
TraesCS3A01G341100.1	Wheat	nucleus, plastid	71.68	72.16
HORVU3Hr1G080560.3	Barley	nucleus, plastid	71.46	71.94
TraesCS3B01G373200.1	Wheat	nucleus	64.6	64.89
KRH40627	Soybean	extracellular, plasma membrane	33.41	57.41

Protein Annotations

EnsemblPlants:CDX73499	EnsemblPlantsGene:GSBRNA2T00109015001	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:CDX73499	ProteinID:CDX73499.1	SUPFAM:SSF69322
UniParc:UPI0004EE4656	MapMan:35.2	:	:	:	:

Description

BnaC08g25040D

Coordinates

chrLK031799:+:744698..747255

Molecular Weight (calculated)

52014.1 Da

IEP (calculated)

8.940

GRAVY (calculated)

-0.341

Length

452 amino acids

Sequence
(BLAST)

001: MEGRRITASP RPCSGRRVVA KKRTRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHSLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRETNRRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKHVQEI KISPGIMLLI FKRATSHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AQLMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITSLGN NSKQRRNAVA EALEDITALF YDEERNEIYT GNRHGFVHVW SN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.