Factsheet for AT3G54190.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73499	Canola	plastid	93.79	96.9
CDX78216	Canola	plastid	93.58	96.68
CDY13190	Canola	plastid	96.36	96.36
Bra014834.1-P	Field mustard	plastid	96.57	95.75
Bra007053.1-P	Field mustard	plastid	95.5	95.1
CDX76163	Canola	plastid	92.08	94.51
AT2G38630.1	Thale cress	plastid	89.72	89.72
VIT_08s0056g00230.t01	Wine grape	plastid	85.44	85.99
EES18406	Sorghum	plastid	79.44	81.36
Os05t0482600-01	Rice	plastid	78.8	80.88
Zm00001d038513_P002	Maize	plastid	77.3	78.82
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	75.8	77.8
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	75.8	77.8
TraesCS1B01G313700.1	Wheat	plastid	75.37	77.36
HORVU1Hr1G069210.3	Barley	nucleus, plastid	75.16	77.14
Zm00001d010625_P003	Maize	plastid	78.59	75.36
KRH00534	Soybean	plastid	76.87	74.95
KRH40628	Soybean	plastid	76.87	74.64
Os01t0817800-01	Rice	plastid	71.73	73.79
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.95	71.71
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.74	71.49
HORVU3Hr1G080560.3	Barley	nucleus, plastid	68.52	71.27
TraesCS3B01G373200.1	Wheat	nucleus	62.74	65.11
KRH40627	Soybean	extracellular, plasma membrane	33.4	59.32

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.2	EntrezGene:824586	UniProt:A0A178VNH0	ProteinID:AEE79197.1	EMBL:AF360263
EMBL:AF428345	ArrayExpress:AT3G54190	EnsemblPlantsGene:AT3G54190	RefSeq:AT3G54190	TAIR:AT3G54190	RefSeq:AT3G54190-TAIR-G
EnsemblPlants:AT3G54190.1	TAIR:AT3G54190.1	EMBL:AY040076	Unigene:At.22584	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	InterPro:IPR015943	RefSeq:NP_566994.1	ProteinID:OAP07041.1	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR31789
UniProt:Q9C5G8	SUPFAM:SSF69322	UniParc:UPI00000A1138	InterPro:WD40/YVTN_repeat-like_dom_sf	:	:

Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]

Coordinates

chr3:-:20061418..20064161

Molecular Weight (calculated)

53422.7 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.373

Length

467 amino acids

Sequence
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.