Factsheet for Bra014834.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012471.1-P
Bra026838.1-P
Bra028057.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	Bra026838.1-P	AT1G14330.1	21798944
AT3G54190.1	Bra012471.1-P	AT1G25550.1	21798944
AT3G54190.1	Bra028057.1-P	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13190	Canola	plastid	98.51	99.36
Bra007053.1-P	Field mustard	plastid	96.6	97.01
CDX76163	Canola	plastid	93.42	96.7
AT3G54190.1	Thale cress	plastid	95.75	96.57
VIT_08s0056g00230.t01	Wine grape	plastid	84.29	85.56
EES18406	Sorghum	plastid	77.71	80.26
Os05t0482600-01	Rice	plastid	77.49	80.22
Zm00001d038513_P002	Maize	plastid	76.01	78.17
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	74.1	76.7
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	74.1	76.7
TraesCS1B01G313700.1	Wheat	plastid	73.67	76.26
HORVU1Hr1G069210.3	Barley	nucleus, plastid	73.46	76.04
KRH40628	Soybean	plastid	75.8	74.22
Zm00001d010625_P003	Maize	plastid	76.65	74.13
KRH00534	Soybean	plastid	75.37	74.11
Os01t0817800-01	Rice	plastid	70.28	72.91
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.37	71.71
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.15	71.49
HORVU3Hr1G080560.3	Barley	nucleus, plastid	67.94	71.27
TraesCS3B01G373200.1	Wheat	nucleus	62.21	65.11
KRH40627	Soybean	extracellular, plasma membrane	32.48	58.17

Protein Annotations

EnsemblPlants:Bra014834.1	EnsemblPlants:Bra014834.1-P	EnsemblPlantsGene:Bra014834	PANTHER:PTHR31789	SEG:seg	SUPFAM:SSF69322
UniParc:UPI00025450A0	UniProt:M4DEB3	MapMan:35.2	:	:	:

Description

AT3G54190 (E=1e-258) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

Coordinates

chrA04:+:3500264..3502233

Molecular Weight (calculated)

53783.9 Da

IEP (calculated)

8.375

GRAVY (calculated)

-0.383

Length

471 amino acids

Sequence
(BLAST)

001: MEGRRITASP RPCSGGRRVV AKKRPRPDGF VNSVKKLQRR EISSRKDRAF SISTAQERFR NMRLVEQYDT HDPKGHCLVA LPFLMKRTKV IEIVAARDIV
101: FALAHSGVCA AFSRETNRRI CFLNVSPDEV IRSLFYNKNN DSLITVSVYA SDNFSSLKCR STRIEYILRG QPDAGFALFE SESLKWPGFV EFDDVNGKVL
201: TYSAQDSVYK VFDLKNYTML YSISDKHVQE IKISPGIMVL IFKRATSHVP LKILSIEDGT VLKSFNHLLH RNKKVDFIEQ FNEKLLVKQE NENLQILDVR
301: TAEQMEVSRA EFMTPSAFIF LYENQLFLTF RNRNVSVWNF RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKADT EDQWIEGNAG SINISNILTG
401: KCLAKITSSS GPPKEDESSS TSSSSSLGTN SKQRRNAVAE ALEDITALFY DEERNEIYTG NRHGFVHVWS N

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.