Factsheet for Zm00001d010625_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007596_P001
Zm00001d014203_P001
Zm00001d023402_P001
Zm00001d023411_P001
Zm00001d023606_P005
Zm00001d027856_P001
Zm00001d033012_P001
Zm00001d041839_P001
Zm00001d048310_P001
Zm00001d048898_P001
Zm00001d052253_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	Zm00001d007596_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d014203_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d027856_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d033012_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d048310_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d048898_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d052253_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d023402_P001	AT1G25550.1	21798944
AT3G54190.1	Zm00001d023411_P001	AT1G25550.1	21798944
AT3G54190.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT3G54190.1	Zm00001d041839_P001	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18406	Sorghum	plastid	90.97	97.15
Zm00001d038513_P002	Maize	plastid	87.68	93.23
Os05t0482600-01	Rice	plastid	86.24	92.31
TraesCS1B01G313700.1	Wheat	plastid	84.39	90.33
HORVU1Hr1G069210.3	Barley	nucleus, plastid	84.19	90.11
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	84.19	90.11
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	84.19	90.11
CDX78216	Canola	plastid	75.15	80.97
CDX73499	Canola	plastid	75.15	80.97
PGSC0003DMT400013483	Potato	plastid	77.62	79.08
CDX76163	Canola	plastid	73.72	78.9
Solyc03g095260.2.1	Tomato	plastid	77.41	78.87
AT3G54190.1	Thale cress	plastid	75.36	78.59
Bra007053.1-P	Field mustard	plastid	75.36	78.25
VIT_08s0056g00230.t01	Wine grape	plastid	73.92	77.59
Solyc06g048480.2.1	Tomato	nucleus	76.39	77.5
CDY13190	Canola	plastid	74.13	77.3
AT2G38630.1	Thale cress	plastid	74.13	77.3
KRH53685	Soybean	nucleus, plastid	75.77	77.2
KRH72561	Soybean	nucleus	75.98	77.08
KRH16944	Soybean	plastid	75.77	77.04
KRH64247	Soybean	nucleus, plastid	75.56	76.67
Bra014834.1-P	Field mustard	plastid	74.13	76.65
VIT_13s0067g00100.t01	Wine grape	plastid	72.28	72.28
KRH40628	Soybean	plastid	68.58	69.44
KRH00534	Soybean	plastid	67.76	68.89
Zm00001d023762_P001	Maize	mitochondrion	65.91	66.46
KRH53714	Soybean	cytosol	34.91	65.89
Zm00001d041759_P002	Maize	cytosol, mitochondrion	65.91	63.31
KRH40627	Soybean	extracellular, plasma membrane	30.6	56.65
Zm00001d018291_P002	Maize	cytosol, mitochondrion, nucleus, plastid	61.4	50.0

Protein Annotations

EnsemblPlants:Zm00001d010625_P003	EnsemblPlants:Zm00001d010625_T003	EnsemblPlantsGene:Zm00001d010625	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	ProteinID:AQK94496.1	ProteinID:AQK94498.1	SUPFAM:SSF69322
UniParc:UPI000843A472	UniProt:A0A1D6FSG1	MapMan:35.2	:	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr8:+:122237999..122247973

Molecular Weight (calculated)

56200.8 Da

IEP (calculated)

8.581

GRAVY (calculated)

-0.375

Length

487 amino acids

Sequence
(BLAST)

001: MEPRRISASP RPCSVRRVVA RKRPRQEAVV SSVRKLQRRE ISSRRDRAFA MSAAQERFRN IHLQEEFDTH DPKENTLLLP YLRKRSKIIE IVAARDIVFA
101: LSQSGVCAAF SREANERICF LNGSPDEVIR SLFYNKNNDS LITVSVYGSE NFSALRCRTT RIEYALSMQL FFFFFGHVIL LKSPSNYSRY IRRGQPDAGF
201: PLFESESLKW PGFVEFDDVN GKVLTYSAQD STYKVFDLKN YTLLYSVSDK NVQEIKISPG IMLLIYTRTN SSVPLKILSI EDGTVLKSFS HLLHRNKKVD
301: FIEQFNEKLL VKQEGENLQI LDVRNFQLTE VSRTEFMTPS AFIFLYELQL FLTFRNRSVA VWNFRGELVT SFEDHLLWHP DCNTNNIYIT SDQDLIISYC
401: KADSTDSSSE ENAGSINISS ILTGKCLAKI NPGNSCKQKD PCKQKKAWRF QNTVSEALED ITALYYDEDR DEIYTGNRHG LVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.