Factsheet for Zm00001d048310_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40080	Sorghum	cytosol	94.16	94.16
Zm00001d027856_P001	Maize	cytosol	90.65	90.44
TraesCS4D01G286700.1	Wheat	cytosol	67.52	87.58
Os03t0171600-01	Rice	cytosol	87.38	86.77
TraesCS4A01G016200.1	Wheat	cytosol	82.71	82.13
HORVU4Hr1G075310.1	Barley	cytosol	84.11	82.0
TraesCS4A01G493800.1	Wheat	cytosol	46.73	79.68
TraesCS7A01G004600.1	Wheat	cytosol	62.85	73.9
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	75.23	72.69
Zm00001d033012_P001	Maize	cytosol	74.53	71.52
TraesCS7D01G007100.1	Wheat	cytosol	59.81	68.82
TraesCS7D01G005100.1	Wheat	cytosol	34.11	67.91
GSMUA_Achr8P01380_001	Banana	cytosol	56.07	63.16
HORVU2Hr1G057150.1	Barley	cytosol	27.34	62.9
HORVU2Hr1G057140.1	Barley	cytosol	27.34	62.9
TraesCS4A01G487800.1	Wheat	cytosol	37.85	62.79
GSMUA_Achr1P21630_001	Banana	cytosol	53.97	61.27
Zm00001d052253_P001	Maize	cytosol	58.88	59.57
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	53.04	58.96
CDY33755	Canola	cytosol	16.82	58.54
TraesCS4A01G489300.1	Wheat	cytosol	51.64	58.01
TraesCS4A01G489600.1	Wheat	cytosol	51.17	57.94
VIT_17s0000g05920.t01	Wine grape	cytosol	58.18	56.21
GSMUA_Achr8P17960_001	Banana	nucleus	54.44	56.01
Solyc03g113010.1.1	Tomato	cytosol	57.01	55.33
Bra026838.1-P	Field mustard	nucleus	52.57	55.28
Solyc04g005670.1.1	Tomato	cytosol	51.87	54.95
GSMUA_Achr10P...	Banana	nucleus	55.84	54.94
CDY62015	Canola	nucleus	53.27	54.94
KRH63378	Soybean	cytosol	56.54	54.88
KRH54527	Soybean	cytosol	56.54	54.88
CDX81631	Canola	nucleus	52.1	54.52
PGSC0003DMT400007346	Potato	nucleus	54.91	54.27
CDY49094	Canola	nucleus	53.5	54.01
PGSC0003DMT400046591	Potato	extracellular	56.78	53.29
Bra026575.1-P	Field mustard	nucleus	54.67	52.7
CDY09349	Canola	nucleus	54.67	52.7
CDY62176	Canola	nucleus	54.91	52.57
CDY60836	Canola	cytosol	46.5	52.37
GSMUA_Achr2P14920_001	Banana	mitochondrion	58.18	52.09
KRH03453	Soybean	cytosol	49.53	51.96
AT1G14330.1	Thale cress	nucleus	53.5	51.93
HORVU7Hr1G000010.5	Barley	cytosol	53.04	51.83
Bra017407.1-P	Field mustard	nucleus, plastid	52.57	51.25
CDY17425	Canola	cytosol	47.9	51.12
CDY03028	Canola	cytosol	53.04	50.56
Bra024801.1-P	Field mustard	nucleus	53.5	50.55
CDY45190	Canola	nucleus	53.5	50.55
AT1G26930.1	Thale cress	cytosol	49.53	50.36
AT2G02870.1	Thale cress	nucleus	54.67	50.11
Zm00001d007596_P001	Maize	nucleus, plastid	51.17	49.66
CDY46430	Canola	cytosol	49.3	49.53
CDY52764	Canola	cytosol	49.07	49.41
Bra016297.1-P	Field mustard	cytosol	49.07	49.3
CDY16205	Canola	nucleus	48.6	49.17
Solyc04g005870.1.1	Tomato	cytosol	6.07	49.06
Zm00001d048898_P001	Maize	cytosol	49.77	48.97
KRH56929	Soybean	cytosol	46.26	48.65
PGSC0003DMT400059324	Potato	cytosol	54.44	48.54
CDY33754	Canola	nucleus	27.8	47.6
GSMUA_Achr4P24130_001	Banana	nucleus	57.01	47.2
GSMUA_Achr3P01570_001	Banana	golgi	53.74	47.03
VIT_01s0026g02080.t01	Wine grape	nucleus	57.48	45.47
KRH45883	Soybean	cytosol	56.78	45.08
KRG99114	Soybean	cytosol	56.31	44.71
KRH74828	Soybean	cytosol	56.07	44.69
KRH70694	Soybean	cytosol	56.07	44.53
TraesCS4A01G491100.1	Wheat	cytosol	54.67	44.49
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	16.36	44.3
HORVU7Hr1G000070.1	Barley	cytosol	54.21	44.19
Zm00001d026321_P001	Maize	cytosol	43.93	41.96
Zm00001d002284_P003	Maize	mitochondrion	45.56	39.96
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	42.29	38.19
PGSC0003DMT400007391	Potato	cytosol	11.21	35.82
Solyc05g007220.2.1	Tomato	nucleus	52.34	34.78
Zm00001d007538_P001	Maize	cytosol	23.13	33.33
Zm00001d019862_P001	Maize	cytosol	41.82	26.17
Zm00001d014338_P001	Maize	cytosol	17.76	21.84
Zm00001d032991_P001	Maize	cytosol	21.96	21.51
Zm00001d015744_P001	Maize	plastid	20.09	20.57
Zm00001d016553_P001	Maize	cytosol	17.29	20.33
Zm00001d027827_P001	Maize	cytosol, mitochondrion, nucleus	19.86	19.36
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	20.33	19.08
Zm00001d049632_P001	Maize	cytosol	21.26	19.0
Zm00001d018813_P001	Maize	mitochondrion	17.76	18.54
Zm00001d014986_P001	Maize	cytosol	15.42	18.18
Zm00001d046922_P001	Maize	cytosol	14.49	16.1
Zm00001d046921_P001	Maize	cytosol	14.72	15.99

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	ProteinID:AQL09350.1	ProteinID:AQL09351.1	ProteinID:AQL09354.1	ProteinID:AQL09355.1
ProteinID:AQL09356.1	ProteinID:AQL09357.1	ProteinID:AQL09358.1	ProteinID:AQL09359.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	UniProt:K7W2S7	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF01344
PANTHER:PTHR24413	PANTHER:PTHR24413:SF133	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI000221F230	EnsemblPlantsGene:Zm00001d048310
EnsemblPlants:Zm00001d048310_P001	EnsemblPlants:Zm00001d048310_T001	SEG:seg	:	:	:

Description

F-box/kelch-repeat protein SKIP11

Coordinates

chr9:-:154321064..154325742

Molecular Weight (calculated)

47658.6 Da

IEP (calculated)

7.299

GRAVY (calculated)

-0.436

Length

428 amino acids

Sequence
(BLAST)

001: MMLEGKSYLV PRSLLSSCET ETQWAYLAHE VLGGKRPAPE DVEVEDLDEA DGGGKRSKPP SPQPHTPDIS EGRGSSRHAS GCGEQQGTGS NPMNSIGRDL
101: TLNCLLRLSR SDYGSVASLS RDFRSMVRSG EIYRLRRQNG VAEHWVYFSC NVLEWDAYDP YRERWIQVPK MPPDECFMCS DKESLAVGTE LLVFGMARIV
201: FRYSILTNSW TRAHPMNSPR CLFGSTSVGE KAFVAGGTDS IGNILSSAEM YDSETHTWTP LPSMNRARKM CSGVFMDGKF YVIGGVANNN KLLTCGEEYD
301: LKRRSWRIIE NMSEGLNGVT GAPPLIAVVS NELYAADYSE NDLKKYDKKN NRWITLGKLP ERSVSMNGWG LAFRACGDCL IVIGGPRTYT GRTIELNSWT
401: PNERPPVWNL IARRPSGNFV YNCAVMGC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.