Factsheet for Bra016297.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26930.1	Bra003735.1-P	AT1G75950.1	21798944
AT1G26930.1	Bra008231.1-P	AT1G75950.1	21798944
AT1G26930.1	Bra015801.1-P	AT1G75950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46430	Canola	cytosol	99.53	99.53
CDY52764	Canola	cytosol	98.12	98.35
AT1G26930.1	Thale cress	cytosol	85.92	86.94
Solyc04g005670.1.1	Tomato	cytosol	57.51	60.64
TraesCS4D01G286700.1	Wheat	cytosol	46.48	60.0
Bra026838.1-P	Field mustard	nucleus	57.28	59.95
Bra026575.1-P	Field mustard	nucleus	62.44	59.91
PGSC0003DMT400007346	Potato	nucleus	59.62	58.66
TraesCS4A01G493800.1	Wheat	cytosol	34.51	58.57
Bra017407.1-P	Field mustard	nucleus, plastid	60.33	58.54
Bra024801.1-P	Field mustard	nucleus	61.5	57.84
Bra008155.1-P	Field mustard	cytosol	37.79	54.21
Bra015905.1-P	Field mustard	cytosol	51.17	52.91
GSMUA_Achr8P01380_001	Banana	cytosol	47.18	52.89
Solyc04g005870.1.1	Tomato	cytosol	6.57	52.83
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	51.64	51.76
TraesCS6D01G285100.1	Wheat	cytosol, nucleus, plastid	51.64	51.76
Bra003796.1-P	Field mustard	cytosol	51.88	51.76
TraesCS7A01G004600.1	Wheat	cytosol	44.13	51.65
TraesCS6A01G306000.1	Wheat	cytosol	51.41	51.53
Zm00001d052253_P001	Maize	cytosol	50.94	51.3
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	51.17	51.29
GSMUA_Achr1P21630_001	Banana	cytosol	45.07	50.93
GSMUA_Achr4P09990_001	Banana	cytosol	51.17	50.82
KXG30756	Sorghum	cytosol	50.47	50.59
KXG40080	Sorghum	cytosol	50.7	50.47
Os02t0748300-01	Rice	cytosol	50.23	50.23
PGSC0003DMT400059324	Potato	cytosol	56.57	50.21
TraesCS4A01G016200.1	Wheat	cytosol	50.7	50.12
HORVU4Hr1G075310.1	Barley	cytosol	51.17	49.66
GSMUA_Achr7P20970_001	Banana	cytosol	46.01	49.62
KRH45883	Soybean	cytosol	62.68	49.54
TraesCS7D01G007100.1	Wheat	cytosol	43.19	49.46
Os03t0171600-01	Rice	cytosol	49.77	49.19
Zm00001d027856_P001	Maize	cytosol	49.53	49.18
Zm00001d048310_P001	Maize	cytosol	49.3	49.07
VIT_01s0026g02080.t01	Wine grape	nucleus	61.5	48.43
TraesCS7D01G005100.1	Wheat	cytosol	24.41	48.37
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	50.0	48.08
KRG99114	Soybean	cytosol	60.8	48.05
KRH74828	Soybean	cytosol	60.33	47.86
GSMUA_Achr4P00520_001	Banana	cytosol	43.43	47.56
OQU91835	Sorghum	cytosol, nucleus, plastid	49.53	47.52
KRH70694	Soybean	cytosol	60.09	47.5
Zm00001d033012_P001	Maize	cytosol	49.3	47.09
Zm00001d048898_P001	Maize	cytosol	47.65	46.67
TraesCS4A01G487800.1	Wheat	cytosol	28.17	46.51
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	17.14	46.2
Os11t0602800-01	Rice	nucleus	46.48	45.83
GSMUA_Achr8P17960_001	Banana	nucleus	43.9	44.95
Zm00001d007596_P001	Maize	nucleus, plastid	46.48	44.9
GSMUA_Achr10P...	Banana	nucleus	45.77	44.83
HORVU2Hr1G057140.1	Barley	cytosol	19.48	44.62
HORVU2Hr1G057150.1	Barley	cytosol	19.48	44.62
OQU83795	Sorghum	cytosol	45.77	43.72
Bra002471.1-P	Field mustard	cytosol	38.03	43.2
GSMUA_Achr2P14920_001	Banana	mitochondrion	47.65	42.47
TraesCS4A01G489600.1	Wheat	cytosol	37.56	42.33
TraesCS4A01G489300.1	Wheat	cytosol	37.79	42.26
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	38.03	42.08
GSMUA_Achr3P01570_001	Banana	golgi	47.42	41.31
PGSC0003DMT400007391	Potato	cytosol	11.97	38.06
Solyc05g007220.2.1	Tomato	nucleus	57.28	37.89
GSMUA_Achr4P24130_001	Banana	nucleus	45.31	37.33
HORVU7Hr1G000010.5	Barley	cytosol	37.79	36.76
Bra032052.1-P	Field mustard	cytosol	14.32	34.66
HORVU7Hr1G000070.1	Barley	cytosol	40.14	32.57
TraesCS4A01G491100.1	Wheat	cytosol	38.97	31.56
Bra032983.1-P	Field mustard	cytosol	29.58	30.66
Bra025251.1-P	Field mustard	cytosol	29.58	29.1
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	31.92	28.69
Bra010784.1-P	Field mustard	cytosol	25.82	27.71
Bra034944.1-P	Field mustard	cytosol	26.06	27.14
Bra003447.1-P	Field mustard	cytosol	17.84	21.17
Bra037535.1-P	Field mustard	cytosol	16.9	20.75
Bra033998.1-P	Field mustard	cytosol	17.61	20.72
Bra004227.1-P	Field mustard	cytosol	18.08	20.64
Bra010942.1-P	Field mustard	plastid	16.43	20.29
Bra001739.1-P	Field mustard	cytosol	16.43	20.23
Bra026073.1-P	Field mustard	cytosol	9.62	19.81
Bra005497.1-P	Field mustard	cytosol	6.57	19.44
Bra031360.1-P	Field mustard	plastid	11.03	19.26
Bra011908.1-P	Field mustard	mitochondrion	19.01	18.62
Bra007843.1-P	Field mustard	cytosol	16.2	18.55
Bra012304.1-P	Field mustard	cytosol	20.19	18.42
Bra032358.1-P	Field mustard	mitochondrion, plastid	17.14	18.34
Bra037989.1-P	Field mustard	cytosol, plastid	18.54	18.16
Bra030872.1-P	Field mustard	cytosol	18.31	17.93
Bra030046.1-P	Field mustard	cytosol, plastid	13.15	15.86
Bra030045.1-P	Field mustard	cytosol	15.49	14.01

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra016297	EnsemblPlants:Bra016297.1	EnsemblPlants:Bra016297.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005777	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4DIH0
PFAM:PF01344	PANTHER:PTHR24413	PANTHER:PTHR24413:SF138	SMART:SM00612	SUPFAM:SSF117281	UniParc:UPI00025461ED
SEG:seg	:	:	:	:	:

Description

AT1G26930 (E=3e-201) | kelch repeat-containing F-box family protein

Coordinates

chrA08:-:17760977..17762257

Molecular Weight (calculated)

47498.6 Da

IEP (calculated)

7.367

GRAVY (calculated)

-0.346

Length

426 amino acids

Sequence
(BLAST)

001: MFEGRPRDSC LVSTLFTMPT HQETKWSFSI STKRPFLNDD ESHETDRRHR KKIHKFLNLD GGGDGENGSS DSGSLIPGMN KDDSISCLLR CSRADYCSIA
101: SVSRSLRALI RSGEIYRLRR LQGTLEHWVY FSCHLNEWEA FDPRLKRWMR LPSMPQNECF RYADKESLAV GTDLLVFGWE VSSYVIYRYS LLTNSWSTGK
201: SMNMPRCLFG SASYGEIAVL AGGCDSNGRI LDTAEMYNSE DQTWSVLPAM NKRRKMCSGV FMDGKFYVIG GIGVGEGNEP KVLTCGEEFD MKTRAWKEIP
301: DMSPPRLINQ GNGMSAAAMA PPLVAVVNDQ LYAADHAGMA VRRYDKESRV WVQVGSLPEQ AGSMNGWGLA FRACGDQVIV IGGPKAPGEG FIELNSWVPS
401: DGAPQWHLLG KKQSVNFVYN CAVMSC

Best Arabidopsis Sequence Match ( AT1G26930.1 )
(BLAST)

001: MFEGRPRDSC LVSTLFTMPS HKETKWSFLV SGKRSFLNND ESDLHFKKMY KLTTDSSEGE DNGSSSDSGT LIPGMNRDDS LSCLIRCSRA DYCSIASVNR
101: SLRSLIRSGE IYRLRRLQGT LEHWVYFSCH LNEWEAFDPR SKRWMHLPSM PQNECFRYAD KESLAVGTDL LVFGWEVSSY VIYRYSLLTN SWSTAKSMNM
201: PRCLFGSASY GEIAVLAGGC DSSGRILDTA ELYNYEDQTW LVLPGMNKRR KMCSGVFMDG KFYVIGGIGV GEENEPKVLT CGEEFDLKTR KWTEIPEMSP
301: PRSNQGNGMS AAAMAPPLVA VVNDQLYAAD HAGMAVRRYD KEKRVWNKVG NLPEQAGSMN GWGLAFRACG DRIIVIGGPK APGEGFIELN SWVPSVTTPE
401: WHLLGKKQSV NFVYNCAVMS C

Arabidopsis Description

F-box/kelch-repeat protein At1g26930 [Source:UniProtKB/Swiss-Prot;Acc:Q84M94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.