Factsheet for Bra003447.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58793	Canola	cytosol	94.99	94.99
CDY51562	Canola	cytosol	94.43	94.43
AT3G61350.2	Thale cress	cytosol	71.31	71.51
VIT_15s0046g02710.t01	Wine grape	cytosol	51.25	51.25
KRH48153	Soybean	cytosol	48.47	48.07
VIT_15s0046g02790.t01	Wine grape	cytosol	36.49	47.46
KRH48154	Soybean	cytosol	45.68	44.57
PGSC0003DMT400000478	Potato	nucleus	47.35	42.61
KRH48156	Soybean	cytosol	42.9	42.54
Solyc01g094520.2.1	Tomato	nucleus	47.08	42.36
KRH65052	Soybean	cytosol	36.21	40.62
KRH65051	Soybean	cytosol	37.05	40.55
HORVU6Hr1G007030.1	Barley	cytosol	35.93	37.28
TraesCS6A01G037900.1	Wheat	cytosol	37.6	37.19
EES06149	Sorghum	cytosol	35.1	36.42
Os02t0114600-02	Rice	cytosol	36.49	36.39
GSMUA_Achr4P20790_001	Banana	extracellular	37.88	36.07
TraesCS6B01G052900.2	Wheat	cytosol	38.16	35.86
TraesCS6D01G043400.1	Wheat	cytosol	38.16	35.86
Zm00001d014986_P001	Maize	cytosol	33.15	32.78
Bra001739.1-P	Field mustard	cytosol	23.4	24.28
Bra037535.1-P	Field mustard	cytosol	22.56	23.34
Bra033998.1-P	Field mustard	cytosol	20.61	20.44
Bra007843.1-P	Field mustard	cytosol	21.17	20.43
Bra004227.1-P	Field mustard	cytosol	20.89	20.11
Bra010942.1-P	Field mustard	plastid	19.22	20.0
Bra026073.1-P	Field mustard	cytosol	11.42	19.81
Bra012304.1-P	Field mustard	cytosol	25.07	19.27
Bra030872.1-P	Field mustard	cytosol	22.56	18.62
Bra032358.1-P	Field mustard	mitochondrion, plastid	20.33	18.34
Bra011908.1-P	Field mustard	mitochondrion	22.01	18.16
Bra037989.1-P	Field mustard	cytosol, plastid	21.73	17.93
Bra016297.1-P	Field mustard	cytosol	21.17	17.84
Bra031360.1-P	Field mustard	plastid	11.98	17.62
Bra026838.1-P	Field mustard	nucleus	19.22	16.95
Bra008155.1-P	Field mustard	cytosol	13.93	16.84
Bra002471.1-P	Field mustard	cytosol	17.55	16.8
Bra015905.1-P	Field mustard	cytosol	18.94	16.5
Bra017407.1-P	Field mustard	nucleus, plastid	20.06	16.4
Bra024801.1-P	Field mustard	nucleus	20.33	16.11
Bra005497.1-P	Field mustard	cytosol	6.13	15.28
Bra003796.1-P	Field mustard	cytosol	18.11	15.22
Bra026575.1-P	Field mustard	nucleus	18.66	15.09
Bra032983.1-P	Field mustard	cytosol	16.99	14.84
Bra032052.1-P	Field mustard	cytosol	7.24	14.77
Bra025251.1-P	Field mustard	cytosol	16.71	13.86
Bra030045.1-P	Field mustard	cytosol	17.83	13.59
Bra030046.1-P	Field mustard	cytosol, plastid	13.09	13.31
Bra010784.1-P	Field mustard	cytosol	14.21	12.85
Bra034944.1-P	Field mustard	cytosol	13.09	11.49

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra003447	EnsemblPlants:Bra003447.1	EnsemblPlants:Bra003447.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0008150
GO:GO:0009409	GO:GO:0009628	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M4CGW4	PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF40	SMART:SM00612
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI000254185F	SEG:seg	:	:

Description

AT3G61350 (E=1e-142) SKIP4 | SKIP4 (SKP1 INTERACTING PARTNER 4)

Coordinates

chrA07:+:13232614..13242656

Molecular Weight (calculated)

40211.5 Da

IEP (calculated)

6.881

GRAVY (calculated)

0.012

Length

359 amino acids

Sequence
(BLAST)

001: MESIVHESTN ECADQSKETQ TLLISGVPND ISNLFLARVP RSHHMAMKCV SRRWRDFISS DDFCEYRNKF NDVKTESWIY ALCRHNTCGR VFLHVLNPSR
101: RGWRRVHEIP LHITFRDGMG FAVLGKRLFV LGGCGWVEDA SDDVYCYDAA INTWLHLQPS LSTKRCFFAC ETLDGKIMAI GGLGVNSKAP QTWDIYDPVT
201: KACVSFSDAN IIRDIEDSFV MDGKVYVRGG VGAVVYDGLS GVWKRVEDDM ASGWLGPAVV VGDDLYVLDQ SFGAALTMWC KETRVWIRIG KLSQLVMTQQ
301: CRLVAIGSNI FVIGKDCSTV VIDVENVRKK TMNGVMVCSS IPKTWDDTID VICCKSIAI

Best Arabidopsis Sequence Match ( AT3G61350.1 )
(BLAST)

001: MACIVEDPQR AGQSNETQIA LISGVPDDIS KSCLARVPRE YHMAMKCVSR RWRDFVCSDE MCDYRNEFNL AESWIYALCR DISGGVFLHM LNPFSSRRSW
101: KRINDYPYIP MREGMGFAVL GKRLFVLGGC GWLEDATDEI YCYDAAMNTW FDVVPPLSTK RCYFACETLD GKIIAIGGLG LNPNAKRTWD IYDPLTRTCK
201: SCSDVNIVPE MEDSFVMDGR IYIRGGVGGS STAVYSASSG IWERMDDDMA SGWRGPAVVV AGDLYVLDQT FGAKLTMWCK DTRMWIHIGK LSQLVMKQPC
301: RLVSIGNSIF VIGKDCSTVV IDVENVRKNK MNGVMVCSSI PKTWDDDIDV ISCKSVAI

Arabidopsis Description

SKIP4F-box/kelch-repeat protein SKIP4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.