Factsheet for Bra010942.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90085	Canola	plastid	98.55	98.55
AT1G27420.1	Thale cress	cytosol, plastid	86.09	85.84
Bra030046.1-P	Field mustard	cytosol, plastid	54.49	53.26
Bra030045.1-P	Field mustard	cytosol	65.51	47.98
Bra033998.1-P	Field mustard	cytosol	38.84	37.02
Bra004227.1-P	Field mustard	cytosol	38.55	35.66
Bra026073.1-P	Field mustard	cytosol	12.17	20.29
Bra011908.1-P	Field mustard	mitochondrion	25.22	20.0
Bra030872.1-P	Field mustard	cytosol	24.64	19.54
Bra037989.1-P	Field mustard	cytosol, plastid	24.35	19.31
Bra003447.1-P	Field mustard	cytosol	20.0	19.22
Bra032358.1-P	Field mustard	mitochondrion, plastid	22.03	19.1
Bra001739.1-P	Field mustard	cytosol	19.13	19.08
Bra037535.1-P	Field mustard	cytosol	18.84	18.73
Bra002471.1-P	Field mustard	cytosol	18.84	17.33
Bra007843.1-P	Field mustard	cytosol	18.26	16.94
Bra012304.1-P	Field mustard	cytosol	22.9	16.92
Bra032983.1-P	Field mustard	cytosol	20.0	16.79
Bra016297.1-P	Field mustard	cytosol	20.29	16.43
Bra005497.1-P	Field mustard	cytosol	6.38	15.28
Bra008155.1-P	Field mustard	cytosol	13.04	15.15
Bra026575.1-P	Field mustard	nucleus	19.13	14.86
Bra017407.1-P	Field mustard	nucleus, plastid	18.84	14.81
Bra015905.1-P	Field mustard	cytosol	17.68	14.81
Bra024801.1-P	Field mustard	nucleus	19.13	14.57
Bra025251.1-P	Field mustard	cytosol	18.26	14.55
Bra031360.1-P	Field mustard	plastid	10.14	14.34
Bra003796.1-P	Field mustard	cytosol	17.68	14.29
Bra026838.1-P	Field mustard	nucleus	16.81	14.25
Bra010784.1-P	Field mustard	cytosol	15.94	13.85
Bra032052.1-P	Field mustard	cytosol	6.67	13.07
Bra034944.1-P	Field mustard	cytosol	14.2	11.98

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra010942	EnsemblPlants:Bra010942.1	EnsemblPlants:Bra010942.1-P	InterPro:F-box-like_dom_sf
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M4D388	PFAM:PF01344	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI0002545A61	SEG:seg	:	:	:

Description

AT1G27420 (E=2e-174) | kelch repeat-containing F-box family protein

Coordinates

chrA08:-:17218235..17219534

Molecular Weight (calculated)

38941.0 Da

IEP (calculated)

6.298

GRAVY (calculated)

-0.259

Length

345 amino acids

Sequence
(BLAST)

001: MDSSPSSLIP GLTDDAAELC LSRTPRSNFR TISQVCRRWR TFLRSEHFAS VRELTGTVEE FMCVLMESEC GRDVFWEVFD ASGNKLGQIP PIPGPTKRGF
101: GVAVLGGGKI VFVGGYTEVE GSSSINSTIV SASADVYEFD PASNRWRKLA GMNIPRYNFA FAVVNGLLYV IRGYSTDAYS LSNSEVYNPE TNRWSLMDCP
201: NRPVWRGFAF SFKSKLFAVG NGSRFIDIYD PKTETWEELD SEQSISVYSY TVVRNKVYFM DRNMPGRLGV FDPEENYWSS VGVPPRAGGF WFRLGEWNNK
301: VLLFSRVCGH ETLMYDLDKE NGSKWRVCDQ IKPSASHLTS VLINF

Best Arabidopsis Sequence Match ( AT1G27420.1 )
(BLAST)

001: MVVESSSSPI IPGLTDDVAE LCVSKIPRSS FQITSQVCRR WRSFLRSQHF AAVRKLTGTV EEFLCVLMES ECGRDVYWEV FDASGNKLGQ IPPVPGPLKR
101: GFGVAVLDGG KIVFFGGYTE VEGSGINSTT VSASADVYEF DPANNSWRKL AGMNIPRYNF AFAEVNGLLY VIRGYSTDTY SLSNAEVYNP KTNQWSLMHC
201: PNRPVWRGFA FAFSSKLYAV GNGSRFIDIY DPKTQTWEEL NSEQSVSVYS YTVVRNKVYF MDRNMPGRLG VFDPEENSWS SVFVPPREGG FWVRLGVWNN
301: KVLLFSRVCG HETLMYDLDK EKGSKWRVCD QIKPSASQLA SVLINF

Arabidopsis Description

Putative F-box/kelch-repeat protein At1g27420 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZJ3]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.