Factsheet for Bra012304.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01300	Canola	cytosol	46.9	97.77
CDY00415	Canola	mitochondrion	42.4	92.52
Bra031360.1-P	Field mustard	plastid	38.33	73.36
AT1G22040.1	Thale cress	plastid	74.3	73.05
KRH62415	Soybean	cytosol	34.26	57.97
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	58.46	57.23
KRH53131	Soybean	cytosol	57.39	56.3
GSMUA_Achr6P04050_001	Banana	cytosol	53.53	54.95
KRH18847	Soybean	cytosol	54.82	53.89
KRH16647	Soybean	cytosol, plastid	54.6	53.46
Os02t0574900-01	Rice	cytosol	48.82	49.57
Os10t0363600-01	Rice	cytosol, plastid	49.46	48.63
EES05304	Sorghum	cytosol, peroxisome, plastid	47.75	48.58
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	47.75	48.48
KXG24326	Sorghum	cytosol	48.39	48.29
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	46.68	47.81
HORVU6Hr1G052010.1	Barley	cytosol	46.9	47.61
TraesCS7D01G016400.1	Wheat	cytosol, plastid	46.04	47.15
TraesCS7A01G020100.1	Wheat	cytosol, plastid	46.04	47.15
TraesCS4A01G472100.1	Wheat	cytosol	45.4	46.29
HORVU7Hr1G002140.2	Barley	mitochondrion	46.25	45.28
GSMUA_Achr10P...	Banana	cytosol	49.68	44.62
Zm00001d049632_P001	Maize	cytosol	45.4	44.26
KRH55297	Soybean	cytosol	25.27	40.27
GSMUA_Achr2P22090_001	Banana	cytosol	31.48	38.99
Bra037535.1-P	Field mustard	cytosol	20.13	27.09
Bra001739.1-P	Field mustard	cytosol	19.49	26.3
Bra007843.1-P	Field mustard	cytosol	20.77	26.08
Bra033998.1-P	Field mustard	cytosol	19.91	25.69
Bra003447.1-P	Field mustard	cytosol	19.27	25.07
Bra011908.1-P	Field mustard	mitochondrion	22.7	24.37
Bra037989.1-P	Field mustard	cytosol, plastid	22.7	24.37
Bra026073.1-P	Field mustard	cytosol	10.71	24.15
Bra030872.1-P	Field mustard	cytosol	22.27	23.91
Bra032358.1-P	Field mustard	mitochondrion, plastid	20.13	23.62
Bra004227.1-P	Field mustard	cytosol	18.84	23.59
Bra010942.1-P	Field mustard	plastid	16.92	22.9
Bra002471.1-P	Field mustard	cytosol	17.13	21.33
Bra008155.1-P	Field mustard	cytosol	13.49	21.21
Bra026838.1-P	Field mustard	nucleus	18.42	21.13
Bra005497.1-P	Field mustard	cytosol	6.42	20.83
Bra016297.1-P	Field mustard	cytosol	18.42	20.19
Bra015905.1-P	Field mustard	cytosol	17.77	20.15
Bra017407.1-P	Field mustard	nucleus, plastid	18.84	20.05
Bra003796.1-P	Field mustard	cytosol	18.2	19.91
Bra026575.1-P	Field mustard	nucleus	18.63	19.59
Bra032052.1-P	Field mustard	cytosol	7.28	19.32
Bra032983.1-P	Field mustard	cytosol	16.92	19.22
Bra024801.1-P	Field mustard	nucleus	18.63	19.21
Bra010784.1-P	Field mustard	cytosol	15.85	18.64
Bra025251.1-P	Field mustard	cytosol	17.13	18.48
Bra030046.1-P	Field mustard	cytosol, plastid	13.06	17.28
Bra034944.1-P	Field mustard	cytosol	14.99	17.11
Bra030045.1-P	Field mustard	cytosol	14.99	14.86

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	EnsemblPlantsGene:Bra012304	EnsemblPlants:Bra012304.1	EnsemblPlants:Bra012304.1-P
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M4D744	PFAM:PF01344	PFAM:PF12937
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF39	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI00025414A7	SEG:seg	:	:	:

Description

AT1G22040 (E=7e-128) | kelch repeat-containing F-box family protein

Coordinates

chrA07:-:8674183..8675586

Molecular Weight (calculated)

51611.0 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.175

Length

467 amino acids

Sequence
(BLAST)

001: MGSVMSLSKS TTQDEDFSNE SFKILKTFST NDEDYCRLIP NLPDELSIQI LARLPRICYS NVQLVSRRWR SFVSTSELYS LRKELGKTEE WLYVLTKGQD
101: DNLAWYALDP VTTRWQRLPP MPVIVYEEEP TTSSLWSLLS SLGRKEVSVS EQTPFCGCAV GSVNGCLYVL GGISRSTTVN SVWRFDPVLN SWSEVSSMLA
201: NRAYSKTGVL DKKLYVVGGV ESRRGSLYPV QTAEVYDPDT DVWSEVPSIP FSKAQMLHDA FLAEMLKPIA TGMTCYNGRL CVTQSLCSWP VFYDAGGKVY
301: DPETSLWGDM PSDMGEGWPA RQAGTKLSVV VGGELYGFDP SSSSSVENGK IKVYDQREDT WKVVIGEVPV YDVTDSKSSY LLAEFHGKLH FITRDAYCNV
401: TVFSADVAEI RSSSSSSLSS SKSVLGSCSL KEKGNGDNKS ADSVIWKVIA SKDLGAAELV SCLVMDI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.