CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome, plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	91.07	91.67
Os02t0574900-01	Rice	cytosol	78.65	78.48
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	78.0	77.83
HORVU6Hr1G052010.1	Barley	cytosol	76.25	76.09
GSMUA_Achr6P04050_001	Banana	cytosol	60.78	61.32
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	61.44	59.12
PGSC0003DMT400032733	Potato	cytosol, plastid	58.61	56.63
Solyc01g104980.2.1	Tomato	cytosol, plastid	58.39	56.42
VIT_12s0055g00910.t01	Wine grape	cytosol	58.61	56.16
KRH53131	Soybean	cytosol	56.86	54.83
KRH58301	Soybean	cytosol	57.3	54.68
KRH42190	Soybean	cytosol, plastid	57.08	54.47
AT1G22040.1	Thale cress	plastid	55.12	53.26
KRH18847	Soybean	cytosol	54.9	53.05
KXG24326	Sorghum	cytosol	53.59	52.56
KRH16647	Soybean	cytosol, plastid	54.47	52.41
GSMUA_Achr10P...	Banana	cytosol	59.26	52.31
KRH62415	Soybean	cytosol	31.15	51.81
CDY00415	Canola	mitochondrion	23.97	51.4
KRH72270	Soybean	cytosol	14.38	50.38
CDY04697	Canola	cytosol	23.97	49.33
CDY01300	Canola	cytosol	23.97	49.11
CDY01301	Canola	cytosol	16.78	49.04
CDY30645	Canola	nucleus	23.75	48.88
Bra012304.1-P	Field mustard	cytosol	48.58	47.75
Bra031360.1-P	Field mustard	plastid	24.18	45.49
KRH55297	Soybean	cytosol	26.14	40.96
OQU82118	Sorghum	cytosol	19.61	25.86
EES06149	Sorghum	cytosol	19.17	25.43
EER97991	Sorghum	mitochondrion	22.88	25.36
EER91632	Sorghum	plastid	23.97	25.17
KXG29748	Sorghum	plastid	23.53	24.83
EER90147	Sorghum	cytosol	21.13	24.68
EES06854	Sorghum	cytosol	20.04	24.02
EER95442	Sorghum	mitochondrion	22.88	23.97
OQU81371	Sorghum	mitochondrion	18.08	22.02
KXG40080	Sorghum	cytosol	18.95	20.33
KXG27134	Sorghum	cytosol	11.76	20.07
KXG30756	Sorghum	cytosol	18.08	19.53
OQU91835	Sorghum	cytosol, nucleus, plastid	18.52	19.14
OQU83795	Sorghum	cytosol	17.21	17.71
OQU82347	Sorghum	mitochondrion	16.99	16.53

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:8068941	UniProt:C5XVN8	EnsemblPlants:EES05304	ProteinID:EES05304
ProteinID:EES05304.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	EnsemblPlantsGene:SORBI_3004G189200
SUPFAM:SSF117281	SUPFAM:SSF81383	unigene:Sbi.20263	UniParc:UPI0001A858CD	RefSeq:XP_002452328.1	:

Description

hypothetical protein

Coordinates

chr4:+:54108626..54111290

Molecular Weight (calculated)

50935.0 Da

IEP (calculated)

6.521

GRAVY (calculated)

-0.096

Length

459 amino acids

Sequence
(BLAST)

001: MGSILSAANT TAKSMDHHET SGTYPNKRVK VSTYEYGSNP RIIPTLPDEI SLQILARLPR IHYLNLKMVS QAWKAAIIGS ELSQLRKELG VSEEWLYVLT
101: KVEANKLHWY ALDPVFQKWQ RLPPMPSFVN EEESNRTASS GFRMWNVVGS SIKIADFVRG LFWRRNSLDQ MPFCGCSVGV ADGYLYVIGG FSKAVALNCV
201: WRYDPFLNLW QEVSPMITGR AFCKATFLNG KLYVVGGVSR GRNGLLPLRS AEAFDPKTGL WSELPEMPFA KAQVLPTAFL VDVLKPIATG MAPYNGKLYV
301: PQSLYSWPFF FDIGGEIYDP DLNAWSTMPD GLGDGWPARQ AGTKLGIVID DKLYTLEPSG SLDSGQIKRY NSEEDTWVTI LPQVPVNDFT DAEAPYLLAG
401: LHGRLHVITK AANNTLQVMQ AVVQNNSDNA VSGENVVWTT VASRNFGTAE LVSCQVLDV

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.