CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049632_P001	Maize	cytosol	79.7	77.87
Os10t0363600-01	Rice	cytosol, plastid	73.93	72.84
TraesCS4A01G472100.1	Wheat	cytosol	66.45	67.9
TraesCS7D01G016400.1	Wheat	cytosol, plastid	66.03	67.76
TraesCS7A01G020100.1	Wheat	cytosol, plastid	66.03	67.76
HORVU7Hr1G002140.2	Barley	mitochondrion	66.67	65.41
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	58.12	57.02
Solyc01g104980.2.1	Tomato	cytosol, plastid	57.05	56.21
VIT_12s0055g00910.t01	Wine grape	cytosol	57.27	55.95
KRH18847	Soybean	cytosol	56.62	55.79
KRH53131	Soybean	cytosol	56.2	55.25
PGSC0003DMT400032733	Potato	cytosol, plastid	55.98	55.16
KRH72270	Soybean	cytosol	15.38	54.96
KRH16647	Soybean	cytosol, plastid	55.98	54.93
KRH62415	Soybean	cytosol	32.27	54.71
EES05304	Sorghum	cytosol, peroxisome, plastid	52.56	53.59
KRH42190	Soybean	cytosol, plastid	54.7	53.22
KRH58301	Soybean	cytosol	53.85	52.39
CDY00415	Canola	mitochondrion	23.72	51.87
AT1G22040.1	Thale cress	plastid	52.35	51.58
CDY01300	Canola	cytosol	24.36	50.89
Bra012304.1-P	Field mustard	cytosol	48.29	48.39
CDY04697	Canola	cytosol	21.15	44.39
CDY30645	Canola	nucleus	21.15	44.39
GSMUA_Achr2P22090_001	Banana	cytosol	34.62	42.97
CDY01301	Canola	cytosol	14.32	42.68
KRH55297	Soybean	cytosol	26.28	41.98
Bra031360.1-P	Field mustard	plastid	21.58	41.39
EER91632	Sorghum	plastid	25.43	27.23
EER97991	Sorghum	mitochondrion	23.29	26.33
KXG29748	Sorghum	plastid	24.15	25.98
EER95442	Sorghum	mitochondrion	24.15	25.8
OQU82118	Sorghum	cytosol	19.02	25.57
EES06149	Sorghum	cytosol	18.8	25.43
EER90147	Sorghum	cytosol	20.3	24.17
KXG27134	Sorghum	cytosol	13.46	23.42
EES06854	Sorghum	cytosol	18.8	22.98
KXG40080	Sorghum	cytosol	19.23	21.03
OQU81371	Sorghum	mitochondrion	16.88	20.95
OQU91835	Sorghum	cytosol, nucleus, plastid	19.44	20.5
OQU83795	Sorghum	cytosol	18.38	19.28
KXG30756	Sorghum	cytosol	17.31	19.06
OQU82347	Sorghum	mitochondrion	18.8	18.64

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	UniProt:A0A1B6PFE1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	EnsemblPlants:KXG24326	ProteinID:KXG24326
ProteinID:KXG24326.1	ProteinID:KXG24327.1	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF39	SMART:SM00256	SMART:SM00612	EnsemblPlantsGene:SORBI_3007G026500
SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI0001C80D29	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:2423140..2425677

Molecular Weight (calculated)

50824.5 Da

IEP (calculated)

6.772

GRAVY (calculated)

0.018

Length

468 amino acids

Sequence
(BLAST)

001: MGAFLSSAAT KEDQQWVHGE APRPDSSKKM RLSTPLCSHG HPRLIPGLPD EISMQILARM PRMEYLKAKM VSWSWKAAVT GAELYRLRKE LGVAEEWLYI
101: LMKMADDQKL VWHAFDPVSN QWQRLPLMPG ISHSRVYGLG LGDLVSAGIS IFDIIRGWLG QKELLGSIPF CGCAVGAVDG CLYVLGGFSR ASTVKCVWRY
201: DPAVNSWQEV SPMSTGRAFC KTSLLNNKLY VVGGVSKGKN GLAPLKSAEV FDPATGVWAE VPDMLFSKSQ ALPMALADLL KPIATGVTSY RGKLYVPQSL
301: YSWPFAVDVG GEIFDPERNS WEQMPTGMGE GWPARQAGTK LSVVIDGNLY ALEPATSSGS AKIKMYDAQE DTWKVAVSQV PVGAFAESDS PYLLVGFLGK
401: LHLIIKDVGS KINVMQTDSL EPLDSPALSA GTTCQVPDVS LEQADVWKAI ASKSITAAEL VSCQVLSI

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.