Factsheet for PGSC0003DMT400032733

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g104980.2.1	Tomato	cytosol, plastid	96.42	96.42
VIT_12s0055g00910.t01	Wine grape	cytosol	66.74	66.18
KRH42190	Soybean	cytosol, plastid	66.74	65.9
KRH58301	Soybean	cytosol	65.47	64.66
GSMUA_Achr6P04050_001	Banana	cytosol	59.16	61.76
EES05304	Sorghum	cytosol, peroxisome, plastid	56.63	58.61
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	55.16	57.46
Os02t0574900-01	Rice	cytosol	55.58	57.39
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	55.16	56.96
Os10t0363600-01	Rice	cytosol, plastid	56.42	56.42
TraesCS7D01G016400.1	Wheat	cytosol, plastid	54.11	56.36
TraesCS7A01G020100.1	Wheat	cytosol, plastid	54.11	56.36
KXG24326	Sorghum	cytosol	55.16	55.98
TraesCS4A01G472100.1	Wheat	cytosol	53.89	55.9
HORVU6Hr1G052010.1	Barley	cytosol	53.26	55.0
HORVU7Hr1G002140.2	Barley	mitochondrion	53.47	53.25
GSMUA_Achr10P...	Banana	cytosol	57.89	52.88
Zm00001d049632_P001	Maize	cytosol	50.53	50.1
GSMUA_Achr2P22090_001	Banana	cytosol	32.42	40.85
PGSC0003DMT400081852	Potato	cytosol	24.63	26.77
PGSC0003DMT400049746	Potato	cytosol	19.37	26.67
PGSC0003DMT400008228	Potato	cytosol, mitochondrion, peroxisome, plastid	22.32	26.37
PGSC0003DMT400034149	Potato	cytosol	24.21	26.32
PGSC0003DMT400013635	Potato	cytosol	18.74	25.8
PGSC0003DMT400000478	Potato	nucleus	19.16	22.81
PGSC0003DMT400007391	Potato	cytosol	6.32	22.39
PGSC0003DMT400007346	Potato	nucleus	19.58	21.48
PGSC0003DMT400020936	Potato	cytosol	17.47	21.39
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	6.95	20.89
PGSC0003DMT400021985	Potato	nucleus	17.89	20.38
PGSC0003DMT400046591	Potato	extracellular	19.37	20.18
PGSC0003DMT400059324	Potato	cytosol	17.47	17.29

Protein Annotations

EntrezGene:102588371	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1
UniProt:M1AXX3	PFAM:PF01344	PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400012568	PGSC:PGSC0003DMG400012568	EnsemblPlants:PGSC0003DMT400032733
PFscan:PS50181	PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	UniParc:UPI000296CD57	RefSeq:XP_006351803.1	RefSeq:XP_006351804.1	RefSeq:XP_006351805.1	RefSeq:XP_006351806.1
SEG:seg	:	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012568]

Coordinates

chr1:-:81754156..81756635

Molecular Weight (calculated)

52252.6 Da

IEP (calculated)

7.521

GRAVY (calculated)

-0.180

Length

475 amino acids

Sequence
(BLAST)

001: MGGILSRSNH NSNVGDLIEG SQSASCKRQR TSDSFWEHSP RLIPSLPDEI SIQILARLPR IHHLNAKLVS PSWKGAIMSP ELYRCRKKLG TTEVWLYLLT
101: KTEGDKFLWY AFDPISVRWQ KLPPMPAIAV NDEPKSGLSG IRAWNMAGSS IRIADAIRGW LGRRNALDQV PFCGCAIGAV DGCLYALGGF FRAAAMRSVW
201: RYDPIVNAWN EVSPMSTARA YCKTGVLNGK LYVVGGVTRD RGGLTPLQSA EVFNPHTGIW SEIPSMPFSK AQMLPTAFLA DLLKPIATGM TSYRGKLYVP
301: QSLYCWPFFV DVGGEVYDPE TNAWIDMPLG MGDGWPARQA GTKLSVTVEG ELYALDPSST LDSARIKVYD HQDDTWKVIE GDIPINDNSE SPYLLAGFLG
401: KLHVITKDAN HNIMVMQADR QNHSAPSPST SANSSQKNLH EVPEPVLGSE ANMWRVVALR SGGTAELVSC QILDV

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.