Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007346 | Potato | nucleus | 70.0 | 77.6 |
| CDY33755 | Canola | cytosol | 17.29 | 67.48 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 44.17 | 64.24 |
| Solyc05g007220.2.1 | Tomato | nucleus | 85.42 | 63.66 |
| CDY62015 | Canola | nucleus | 55.0 | 63.61 |
| Bra026838.1-P | Field mustard | nucleus | 53.12 | 62.65 |
| AT1G14330.1 | Thale cress | nucleus | 57.5 | 62.59 |
| CDY49094 | Canola | nucleus | 55.0 | 62.26 |
| Bra026575.1-P | Field mustard | nucleus | 57.5 | 62.16 |
| CDY60836 | Canola | cytosol | 49.17 | 62.11 |
| CDX81631 | Canola | nucleus | 52.92 | 62.1 |
| CDY09349 | Canola | nucleus | 57.29 | 61.94 |
| Bra017407.1-P | Field mustard | nucleus, plastid | 56.25 | 61.5 |
| AT2G02870.1 | Thale cress | nucleus | 59.58 | 61.24 |
| CDY62176 | Canola | nucleus | 56.88 | 61.07 |
| CDY17425 | Canola | cytosol | 50.83 | 60.85 |
| CDY03028 | Canola | cytosol | 56.67 | 60.58 |
| CDY45190 | Canola | nucleus | 57.08 | 60.49 |
| Bra024801.1-P | Field mustard | nucleus | 57.08 | 60.49 |
| TraesCS4A01G493800.1 | Wheat | cytosol | 31.25 | 59.76 |
| AT1G26930.1 | Thale cress | cytosol | 52.29 | 59.62 |
| PGSC0003DMT400046591 | Potato | extracellular | 55.0 | 57.89 |
| Zm00001d052253_P001 | Maize | cytosol | 50.21 | 56.97 |
| CDY46430 | Canola | cytosol | 50.21 | 56.57 |
| Bra016297.1-P | Field mustard | cytosol | 50.21 | 56.57 |
| CDY52764 | Canola | cytosol | 50.0 | 56.47 |
| TraesCS6B01G334300.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 56.47 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 56.47 |
| HORVU6Hr1G075590.1 | Barley | cytosol, nucleus, plastid | 50.0 | 56.47 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 50.42 | 56.41 |
| TraesCS6A01G306000.1 | Wheat | cytosol | 49.79 | 56.24 |
| CDY16205 | Canola | nucleus | 49.38 | 56.03 |
| KXG30756 | Sorghum | cytosol | 49.17 | 55.53 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 43.96 | 55.53 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 43.54 | 55.44 |
| Os02t0748300-01 | Rice | cytosol | 49.17 | 55.4 |
| KRH45883 | Soybean | cytosol | 62.08 | 55.29 |
| Os03t0171600-01 | Rice | cytosol | 49.17 | 54.76 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 45.0 | 54.68 |
| TraesCS4A01G016200.1 | Wheat | cytosol | 48.96 | 54.52 |
| Zm00001d048310_P001 | Maize | cytosol | 48.54 | 54.44 |
| KRG99114 | Soybean | cytosol | 61.04 | 54.36 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 61.04 | 54.16 |
| KRH74828 | Soybean | cytosol | 60.42 | 54.0 |
| CDY33754 | Canola | nucleus | 28.12 | 54.0 |
| HORVU4Hr1G075310.1 | Barley | cytosol | 49.38 | 53.99 |
| KXG40080 | Sorghum | cytosol | 48.12 | 53.97 |
| Zm00001d027856_P001 | Maize | cytosol | 47.71 | 53.38 |
| TraesCS7A01G004600.1 | Wheat | cytosol | 40.42 | 53.3 |
| KRH70694 | Soybean | cytosol | 59.79 | 53.25 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 42.92 | 52.96 |
| OQU91835 | Sorghum | cytosol, nucleus, plastid | 48.54 | 52.48 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 40.42 | 52.15 |
| PGSC0003DMT400091785 | Potato | cytosol, mitochondrion, plastid | 17.08 | 51.9 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 44.79 | 51.68 |
| Zm00001d014203_P001 | Maize | cytosol, nucleus, plastid | 47.5 | 51.47 |
| Zm00001d033012_P001 | Maize | cytosol | 47.5 | 51.12 |
| Os11t0602800-01 | Rice | nucleus | 45.0 | 50.0 |
| Zm00001d048898_P001 | Maize | cytosol | 45.21 | 49.89 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 22.29 | 49.77 |
| GSMUA_Achr10P... | Banana | nucleus | 44.79 | 49.43 |
| OQU83795 | Sorghum | cytosol | 45.0 | 48.43 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 47.92 | 48.12 |
| Zm00001d007596_P001 | Maize | nucleus, plastid | 43.54 | 47.39 |
| HORVU2Hr1G057140.1 | Barley | cytosol | 18.33 | 47.31 |
| HORVU2Hr1G057150.1 | Barley | cytosol | 18.33 | 47.31 |
| PGSC0003DMT400020936 | Potato | cytosol | 38.12 | 47.16 |
| TraesCS4A01G487800.1 | Wheat | cytosol | 25.21 | 46.9 |
| PGSC0003DMT400007391 | Potato | cytosol | 12.92 | 46.27 |
| TraesCS4A01G492300.1 | Wheat | cytosol, golgi, plastid | 35.83 | 44.68 |
| TraesCS4A01G489600.1 | Wheat | cytosol | 34.58 | 43.92 |
| TraesCS4A01G489300.1 | Wheat | cytosol | 34.79 | 43.83 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 43.12 | 42.33 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 45.42 | 42.17 |
| HORVU7Hr1G000010.5 | Barley | cytosol | 35.62 | 39.04 |
| HORVU7Hr1G000070.1 | Barley | cytosol | 37.5 | 34.29 |
| TraesCS4A01G491100.1 | Wheat | cytosol | 36.88 | 33.65 |
| PGSC0003DMT400021985 | Potato | nucleus | 27.71 | 31.89 |
| TraesCS4A01G493200.1 | Wheat | cytosol, plasma membrane | 30.42 | 30.8 |
| PGSC0003DMT400049746 | Potato | cytosol | 14.79 | 20.58 |
| PGSC0003DMT400013635 | Potato | cytosol | 14.38 | 20.0 |
| PGSC0003DMT400081852 | Potato | cytosol | 18.12 | 19.91 |
| PGSC0003DMT400000478 | Potato | nucleus | 16.25 | 19.55 |
| PGSC0003DMT400034149 | Potato | cytosol | 17.5 | 19.22 |
| PGSC0003DMT400008228 | Potato | cytosol, mitochondrion, peroxisome, plastid | 15.42 | 18.41 |
| PGSC0003DMT400032733 | Potato | cytosol, plastid | 17.29 | 17.47 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400059324 | EnsemblPlantsGene:PGSC0003DMG400023050 | EntrezGene:102591193 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF138 |
| PFAM:PF01344 | PGSC:PGSC0003DMG400023050 | RefSeq:XP_006363237.1 | SEG:seg | SMART:SM00612 | SUPFAM:SSF117281 |
| UniParc:UPI0002968BA1 | UniProt:M1C441 | MapMan:35.1 | : | : | : |
Description
Kelch repeat-containing F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023050]
Coordinates
chr5:-:5573193..5576442
Molecular Weight (calculated)
53013.2 Da
IEP (calculated)
4.978
GRAVY (calculated)
-0.461
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEDRTCLVQ RDCRTESNWT GCMSYHIDRI DAQNGKRPLE NDEEGENVQC KLQKQSDGSD LEGVVFSVGN SSASADKQAD NQGRAGENFD SASADEQADK
101: QGHAEDDSAA APPDEQAGNQ HQAGDNGDIS TLFPAIGRDN SVSSLIRVSR SDYGTVASLN SEFRSLVRSG ELYRLRRQMD VVEHWVYFSC QLLEWEVFDP
201: TRRRWMHLPT MNPNECFVFS DKESLAVGTE LLVFGKEVLA HVIYRYSLLT NTWTSGMQMN APRCLFGSAS RGEIAILAGG CDSRGKILNS AELYNSEQGT
301: WRTLASMNQP RKMCSGVFMD GKFYVIGGVG GAESKLMTCA EEYDLTTGKW TEIPNMSPVR PNATRNDIPV TSEAPPLVAV VNNQLYAADY AAMEVRKYDK
401: RNKAWVSIGR LPERAASMNG WGLAFRACGN RLIVVGGPRV MGEGYIEVNS WVPSEGPPEW TLLGRKRSGS FVYNCAVMGC
101: QGHAEDDSAA APPDEQAGNQ HQAGDNGDIS TLFPAIGRDN SVSSLIRVSR SDYGTVASLN SEFRSLVRSG ELYRLRRQMD VVEHWVYFSC QLLEWEVFDP
201: TRRRWMHLPT MNPNECFVFS DKESLAVGTE LLVFGKEVLA HVIYRYSLLT NTWTSGMQMN APRCLFGSAS RGEIAILAGG CDSRGKILNS AELYNSEQGT
301: WRTLASMNQP RKMCSGVFMD GKFYVIGGVG GAESKLMTCA EEYDLTTGKW TEIPNMSPVR PNATRNDIPV TSEAPPLVAV VNNQLYAADY AAMEVRKYDK
401: RNKAWVSIGR LPERAASMNG WGLAFRACGN RLIVVGGPRV MGEGYIEVNS WVPSEGPPEW TLLGRKRSGS FVYNCAVMGC
001: MLEDRSPDSC LSTRVFSSSR LSESNWSNSY MYPEDDDKLL GNGKRALEVV GEVRQTKSLK LMGFSIIYDS DSSDYSLSGG EEQADAAIGD GSSSRQEQEQ
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
101: QSDFNDNGGD SSDSHSLINE IGRDNSIDCL IRCSRSDYGS IASLNRNFRS LVKSGEIYRL RRQNGFVEHW VYFSCQLLEW VAFDPVERRW MQLPTMPSSV
201: TFMCADKESL AVGTDLLVLG KDDFSSHVIY RYSLLTNSWS SGMKMNSPRC LFGSASLGEI AIFAGGCDSQ GKILDFAEMY NSELQTWITL PRMNKPRKMC
301: SGVFMDGKFY VIGGIGGADS KGLTCGEEYD LETKKWTQIP DLSPPRSRAD QADMSPAAEA PPLVAVVNNQ LYAADHADME VRKYDKENKK WLTVGRLPER
401: AGSVNGWGLA FRACGERLIV IGGPKCSGGG FIELNSWIPS DGGPPQWTLL DRKHSPTFVY NCAVMGC
Arabidopsis Description
SKIP11F-box/kelch-repeat protein SKIP11 [Source:UniProtKB/Swiss-Prot;Acc:Q8L736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.