Factsheet for GSMUA_Achr2P14920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21630_001	Banana	cytosol	59.2	75.07
GSMUA_Achr8P01380_001	Banana	cytosol	59.41	74.74
GSMUA_Achr8P17960_001	Banana	nucleus	64.64	74.28
GSMUA_Achr4P24130_001	Banana	nucleus	76.15	70.41
GSMUA_Achr10P...	Banana	nucleus	63.18	69.43
TraesCS4D01G286700.1	Wheat	cytosol	47.28	68.48
GSMUA_Achr7P20970_001	Banana	cytosol	53.77	65.06
GSMUA_Achr4P00520_001	Banana	cytosol	52.72	64.78
GSMUA_Achr4P09990_001	Banana	cytosol	56.07	62.47
CDY33755	Canola	cytosol	15.9	61.79
TraesCS4A01G493800.1	Wheat	cytosol	31.8	60.56
Os03t0171600-01	Rice	cytosol	53.35	59.16
GSMUA_Achr3P01570_001	Banana	golgi	60.25	58.9
KXG40080	Sorghum	cytosol	52.51	58.64
Zm00001d027856_P001	Maize	cytosol	52.3	58.28
TraesCS4A01G016200.1	Wheat	cytosol	52.51	58.24
Zm00001d048310_P001	Maize	cytosol	52.09	58.18
HORVU4Hr1G075310.1	Barley	cytosol	52.72	57.4
TraesCS7A01G004600.1	Wheat	cytosol	42.89	56.32
VIT_17s0000g05920.t01	Wine grape	cytosol	51.67	55.76
Zm00001d014203_P001	Maize	cytosol, nucleus, plastid	51.05	55.08
Solyc04g005870.1.1	Tomato	cytosol	6.07	54.72
OQU91835	Sorghum	cytosol, nucleus, plastid	50.63	54.5
TraesCS7D01G007100.1	Wheat	cytosol	42.26	54.3
Zm00001d033012_P001	Maize	cytosol	50.63	54.26
Solyc04g005670.1.1	Tomato	cytosol	45.19	53.47
PGSC0003DMT400007346	Potato	nucleus	48.12	53.12
KRH63378	Soybean	cytosol	48.74	52.83
CDY62015	Canola	nucleus	45.61	52.53
Bra026838.1-P	Field mustard	nucleus	44.56	52.33
CDX81631	Canola	nucleus	44.56	52.08
KRH54527	Soybean	cytosol	47.91	51.93
CDY60836	Canola	cytosol	40.8	51.32
Solyc03g113010.1.1	Tomato	cytosol	47.28	51.25
AT1G14330.1	Thale cress	nucleus	47.28	51.25
CDY49094	Canola	nucleus	45.4	51.18
Bra026575.1-P	Field mustard	nucleus	46.86	50.45
CDY09349	Canola	nucleus	46.86	50.45
CDY62176	Canola	nucleus	47.07	50.34
KRH03453	Soybean	cytosol	42.89	50.25
TraesCS7D01G005100.1	Wheat	cytosol	22.59	50.23
Bra017407.1-P	Field mustard	nucleus, plastid	46.03	50.11
CDY17425	Canola	cytosol	41.84	49.88
PGSC0003DMT400046591	Potato	extracellular	47.49	49.78
TraesCS4A01G487800.1	Wheat	cytosol	26.78	49.61
Os11t0602800-01	Rice	nucleus	44.56	49.31
KRH56929	Soybean	cytosol	41.63	48.89
CDY03028	Canola	cytosol	45.61	48.55
AT1G26930.1	Thale cress	cytosol	42.68	48.46
Bra024801.1-P	Field mustard	nucleus	45.82	48.34
CDY45190	Canola	nucleus	45.82	48.34
AT2G02870.1	Thale cress	nucleus	47.07	48.18
PGSC0003DMT400059324	Potato	cytosol	48.12	47.92
HORVU2Hr1G057140.1	Barley	cytosol	18.62	47.85
HORVU2Hr1G057150.1	Barley	cytosol	18.62	47.85
Bra016297.1-P	Field mustard	cytosol	42.47	47.65
CDY46430	Canola	cytosol	42.47	47.65
CDY52764	Canola	cytosol	42.26	47.53
CDY16205	Canola	nucleus	41.42	46.81
OQU83795	Sorghum	cytosol	43.31	46.41
Zm00001d007596_P001	Maize	nucleus, plastid	42.68	46.26
Zm00001d048898_P001	Maize	cytosol	41.84	45.98
TraesCS4A01G489600.1	Wheat	cytosol	36.19	45.77
TraesCS4A01G492300.1	Wheat	cytosol, golgi, plastid	36.82	45.71
TraesCS4A01G489300.1	Wheat	cytosol	36.4	45.67
VIT_01s0026g02080.t01	Wine grape	nucleus	50.42	44.55
CDY33754	Canola	nucleus	23.01	44.0
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	35.98	42.68
KRG99114	Soybean	cytosol	48.12	42.67
KRH45883	Soybean	cytosol	47.91	42.49
KRH74828	Soybean	cytosol	47.7	42.46
KRH70694	Soybean	cytosol	47.49	42.12
HORVU7Hr1G000010.5	Barley	cytosol	37.66	41.1
GSMUA_Achr9P30470_001	Banana	cytosol	32.22	39.39
GSMUA_Achr11P...	Banana	cytosol	34.52	37.5
PGSC0003DMT400007391	Potato	cytosol	10.25	36.57
HORVU7Hr1G000070.1	Barley	cytosol	39.33	35.81
TraesCS4A01G491100.1	Wheat	cytosol	38.08	34.6
Solyc05g007220.2.1	Tomato	nucleus	46.44	34.47
TraesCS4A01G493200.1	Wheat	cytosol, plasma membrane	33.05	33.33
PGSC0003DMT400091785	Potato	cytosol, mitochondrion, plastid	10.88	32.91
GSMUA_Achr6P24370_001	Banana	cytosol	13.6	18.73
GSMUA_Achr6P04050_001	Banana	cytosol	17.78	18.68
GSMUA_Achr7P08330_001	Banana	cytosol	14.44	17.51
GSMUA_Achr4P20790_001	Banana	extracellular	13.6	17.24
GSMUA_Achr7P27010_001	Banana	cytosol	14.85	17.07
GSMUA_Achr8P28270_001	Banana	cytosol	13.6	16.93
GSMUA_AchrUn_...	Banana	cytosol	12.55	16.81
GSMUA_Achr3P29560_001	Banana	cytosol	14.23	16.55
GSMUA_Achr2P22090_001	Banana	cytosol	12.76	16.18
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	13.81	16.18
GSMUA_Achr10P...	Banana	cytosol	17.57	16.15
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	12.76	15.97
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	12.97	15.9
GSMUA_Achr6P31190_001	Banana	mitochondrion	12.76	14.84
GSMUA_Achr2P18470_001	Banana	cytosol	12.13	13.62
GSMUA_Achr4P03630_001	Banana	plasma membrane	13.6	7.66

Protein Annotations

EnsemblPlants:GSMUA_Achr2P14920_001	EnsemblPlants:GSMUA_Achr2T14920_001	EnsemblPlantsGene:GSMUA_Achr2G14920_001	Gene3D:2.120.10.80	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24413	PANTHER:PTHR24413:SF133
PFAM:PF01344	SEG:seg	SUPFAM:SSF117281	UniParc:UPI000294F609	UniProt:M0S833	MapMan:35.1

Description

F-box/kelch-repeat protein SKIP11 [Source:GMGC_GENE;Acc:GSMUA_Achr2G14920_001]

Coordinates

chr2:+:16477633..16479832

Molecular Weight (calculated)

53768.8 Da

IEP (calculated)

8.809

GRAVY (calculated)

-0.351

Length

478 amino acids

Sequence
(BLAST)

001: MVDYSRNLVK RRGLMSLKMR YKMRPMGSRK GPPFPLFPPL SGPPPPLHSL HTVPEEIRRP FSGQIAGFGF GLGVMLEGRS YLISRVFRSS CEQESDWHCM
101: DYHIHESSDN KKRPLDEEFE EQQLEDRVKR NKSPQLPDTP DIKDMQLLLD NSYHRGREHG DSSIVSQLGG ELIVSCLLRL SRSDYGAVAS LNRMFRSLIR
201: SGELYQLRRK MDIVEHWVYF SCSVLEWEAY DPYRGRWITV PKMPPTESFM CSDKESLAVG TELLVFGKEV NSHIILRYSI LTNSWSRGVV MNSPRCLFGS
301: ASLGEKAIVA GGTNAQARKM CSGVFMDEKF YVIGGMASNT KVLTCGEEYD LKRGSWSVIP NMSDGLNGAN GAPPLVAVVN NELYAAHYAD KELRKYDKVK
401: HTWVRLGSLP ESSVSMNGWG LAFRACGERL IVIGGRRGSL GGMIELNSWI PNRGPPEWNM IASKHSGNFV YNCAVMGC

Best Arabidopsis Sequence Match ( AT1G14330.1 )
(BLAST)

001: MVEDRTYLMS RIFSSSRLSE SKWPYMYPQP EDSSESNLIN GKRALENDVD ELRQSKSPRL MGFSIHGNEA IEEDEQEQDQ SDSNNNGNSD GDSLINDIGR
101: DNSISCLIRC SRSGYGSIAS LNRSFRSLVK TGEIYRLRRQ NQIVEHWVYF SCQLLEWVAF NPFERRWMNL PTMPSGVTFM CADKESLAVG TDLLVLGKDD
201: YSSHVIYRYS LLTNSWSSGM RMNSPRCLFG SASLGEIAIF AGGFDSFGKI SDSAEMYNSE LQTWTTLPKM NKPRKMCSGV FMDGKFYVIG GIGGNDSKVL
301: TCGEEFDLET KKWTEIPEMS PPRSREMPAA AEAPPLVAVV NNELYAADHA DMEVRKYDKE SKKWFTLGRL PERADSVNGW GLAFRACGER LIVIGGPRSS
401: GGGYIELNSW IPSSDRSPPL WTLLGRKHSS NFVYNCAVMG C

Arabidopsis Description

At1g14330/F14L17_7 [Source:UniProtKB/TrEMBL;Acc:Q9M9S9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.