Factsheet for GSMUA_Achr3P16120_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P28270_001	Banana	cytosol	82.2	81.77
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	69.9	68.46
Os02t0504900-01	Rice	cytosol	65.44	64.94
Zm00001d016553_P001	Maize	cytosol	61.78	64.84
EES06854	Sorghum	cytosol	64.4	64.23
VIT_01s0010g03320.t01	Wine grape	cytosol	64.14	63.64
Os04t0380300-01	Rice	plastid	61.78	62.93
KRG97442	Soybean	cytosol, nucleus, peroxisome	60.21	62.16
TraesCS3A01G446400.1	Wheat	cytosol, plastid	62.57	62.08
TraesCS3D01G439000.1	Wheat	cytosol	62.3	61.98
TraesCS3B01G481500.1	Wheat	cytosol, plastid	62.3	61.98
KRH31463	Soybean	cytosol	61.78	61.3
HORVU3Hr1G096780.1	Barley	cytosol, plastid	61.52	61.04
KRH42654	Soybean	cytosol	60.47	59.54
TraesCS2D01G279700.1	Wheat	mitochondrion	56.54	56.4
Bra033998.1-P	Field mustard	cytosol	52.88	55.8
OQU81371	Sorghum	mitochondrion	54.97	55.7
TraesCS2A01G280900.1	Wheat	mitochondrion	55.76	55.61
CDY12647	Canola	cytosol	52.62	55.52
TraesCS2B01G298300.1	Wheat	mitochondrion	55.24	55.09
HORVU2Hr1G068790.2	Barley	cytosol	54.19	53.91
AT1G67480.1	Thale cress	cytosol, mitochondrion	52.09	52.93
Bra004227.1-P	Field mustard	cytosol	51.57	52.81
CDY01812	Canola	cytosol	51.31	52.55
CDX96091	Canola	cytosol	51.05	52.28
CDY64883	Canola	golgi, plastid	53.93	50.12
GSMUA_Achr7P08330_001	Banana	cytosol	25.13	24.37
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	25.13	23.53
GSMUA_Achr3P29560_001	Banana	cytosol	24.87	23.11
GSMUA_Achr7P27010_001	Banana	cytosol	25.13	23.08
GSMUA_Achr6P24370_001	Banana	cytosol	20.94	23.05
GSMUA_Achr6P04050_001	Banana	cytosol	25.92	21.76
GSMUA_Achr6P31190_001	Banana	mitochondrion	21.99	20.44
GSMUA_AchrUn_...	Banana	cytosol	18.59	19.89
GSMUA_Achr10P...	Banana	cytosol	24.35	17.88
GSMUA_Achr2P18470_001	Banana	cytosol	19.63	17.61
GSMUA_Achr4P20790_001	Banana	extracellular	17.28	17.51
GSMUA_Achr2P22090_001	Banana	cytosol	16.75	16.98
GSMUA_Achr8P01380_001	Banana	cytosol	16.75	16.84
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	17.54	16.63
GSMUA_Achr1P21630_001	Banana	cytosol	16.23	16.45
GSMUA_Achr9P30470_001	Banana	cytosol	16.49	16.11
GSMUA_Achr4P09990_001	Banana	cytosol	18.06	16.08
GSMUA_Achr7P20970_001	Banana	cytosol	15.97	15.44
GSMUA_Achr4P00520_001	Banana	cytosol	15.71	15.42
GSMUA_Achr11P...	Banana	cytosol	17.02	14.77
GSMUA_Achr10P...	Banana	nucleus	16.75	14.71
GSMUA_Achr8P17960_001	Banana	nucleus	15.18	13.94
GSMUA_Achr3P01570_001	Banana	golgi	16.75	13.09
GSMUA_Achr2P14920_001	Banana	mitochondrion	15.97	12.76
GSMUA_Achr4P24130_001	Banana	nucleus	15.97	11.8
GSMUA_Achr4P03630_001	Banana	plasma membrane	26.18	11.78

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr3G16120_001	EnsemblPlants:GSMUA_Achr3P16120_001	EnsemblPlants:GSMUA_Achr3T16120_001	InterPro:IPR001810	InterPro:IPR015915
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	UniProt:M0SF28	PFAM:PF00646	PFAM:PF01344
PFAM:PF07646	PANTHER:PTHR24412	PANTHER:PTHR24412:SF377	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI00029537C0	:	:	:	:	:

Description

F-box/kelch-repeat protein At1g67480 [Source:GMGC_GENE;Acc:GSMUA_Achr3G16120_001]

Coordinates

chr3:-:17235930..17237898

Molecular Weight (calculated)

42222.3 Da

IEP (calculated)

8.418

GRAVY (calculated)

0.066

Length

382 amino acids

Sequence
(BLAST)

001: MPSLGIHGLL GGRKRFVDLE VQLHVPVQTN LALTLQASQE LYCPVIPGLP DDVAKFCLTL VPRRDLPVIG AVCKRWMSFI KSKEFLAVRK EAGKLEEWVY
101: VLTGDADGRE NHWEVLVGSG EKGKVLPSMP GPVKAGFGLV VIDAILFIIA GYSVDIGKAC VSNDVYQYDS RLNRWSTLAK MNVARHDFAC AELNGNIYAV
201: GGFDSNGDCL SSVEVYDPNR NMWTLVASLR CPRWGCFACS FEGKLYVMGG RSSFTIGNSR FVNVYNPQHH SWCEMKSGCL MVTAHAVLAK KLFCFEWKNQ
301: RKLAIYDPVD NSWRKIPVPV TGSSAVAFRF GIFDGKLLLF SLEKVPGYQT LLYDPDAPVG SEWKTSSLKP SGLCLCSVTI KA

Best Arabidopsis Sequence Match ( AT1G67480.3 )
(BLAST)

001: MQAFALSGKK RIVNHGMCFS KGNLDLGSRL SENFMDDPLI PGLPDDVAKQ CLALVPRARF PSMGSVCKKW RFVVQSKEFI TVRRLAGMLE EWLYVLTMNA
101: GGKDNRWEVM DCLGQKLSSL PPMPGPAKTG FKVVVVDGKL LVIAGCCMIN GSLVASADVY QYDTCLNSWS RLADLEVARY DFACAEVNGH VYVVGGHGVD
201: GESLSSAEVY DPETCTWTFI ESLRRPRWGC FASAFNGKLY VMGGRSNFTI GNSKLLDVYN TQCGSWHGSK NGLTMVTAHV EVGKKLFCID WKNHRKMSVF
301: NAEDETWEVV ALPLSGSSRA GFQFGKLSGK LLLFSSQEET GQCTLLYDPD ASPGTQWKTS EIKLSGSCVC SVTITA

Arabidopsis Description

F-box/kelch-repeat protein At1g67480 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAG8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.