Factsheet for GSMUA_Achr6P24370_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82118	Sorghum	cytosol	77.52	77.3
Zm00001d014338_P001	Maize	cytosol	77.23	77.01
Os10t0388200-01	Rice	cytosol	76.37	76.37
TraesCS6D01G195800.1	Wheat	cytosol	74.93	73.65
TraesCS6B01G243200.1	Wheat	cytosol	74.93	73.65
TraesCS7B01G234000.1	Wheat	cytosol	70.32	73.49
TraesCS6A01G211500.1	Wheat	extracellular, golgi	59.37	66.88
KRH32035	Soybean	cytosol	64.55	65.12
VIT_07s0151g00770.t01	Wine grape	cytosol	64.55	64.93
KRH71403	Soybean	cytosol	64.27	64.83
Solyc09g065400.1.1	Tomato	cytosol	63.69	64.06
KRH67237	Soybean	cytosol	63.69	64.06
PGSC0003DMT400049746	Potato	cytosol	63.4	63.77
KRG95556	Soybean	cytosol	63.11	63.48
PGSC0003DMT400013635	Potato	cytosol	62.25	62.61
Solyc06g008690.1.1	Tomato	cytosol	62.25	62.61
CDY22982	Canola	cytosol	58.21	58.38
CDX82306	Canola	cytosol	58.21	58.38
Bra001739.1-P	Field mustard	cytosol	57.93	58.09
AT3G63220.2	Thale cress	cytosol	58.21	57.39
Bra037535.1-P	Field mustard	cytosol	57.35	57.35
CDX99248	Canola	cytosol	57.06	56.9
CDY18573	Canola	cytosol	56.77	56.61
CDY58259	Canola	cytosol	56.48	56.48
GSMUA_AchrUn_...	Banana	cytosol	24.21	23.53
GSMUA_Achr2P18470_001	Banana	cytosol	27.38	22.3
GSMUA_Achr6P04050_001	Banana	cytosol	28.82	21.98
GSMUA_Achr6P31190_001	Banana	mitochondrion	25.07	21.17
GSMUA_Achr3P16120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	23.05	20.94
GSMUA_Achr8P28270_001	Banana	cytosol	23.05	20.83
GSMUA_Achr4P20790_001	Banana	extracellular	21.9	20.16
GSMUA_Achr6P20750_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	21.61	19.23
GSMUA_Achr7P08330_001	Banana	cytosol	21.33	18.78
GSMUA_Achr7P27010_001	Banana	cytosol	22.48	18.75
GSMUA_Achr3P29560_001	Banana	cytosol	22.19	18.73
GSMUA_Achr2P22090_001	Banana	cytosol	19.6	18.04
GSMUA_Achr2P17100_001	Banana	cytosol, plastid	21.04	17.89
GSMUA_Achr4P09990_001	Banana	cytosol	21.9	17.72
GSMUA_Achr8P01380_001	Banana	cytosol	19.31	17.63
GSMUA_Achr3P23350_001	Banana	cytosol, extracellular	20.46	17.62
GSMUA_Achr10P...	Banana	cytosol	26.22	17.5
GSMUA_Achr1P21630_001	Banana	cytosol	18.73	17.24
GSMUA_Achr7P20970_001	Banana	cytosol	19.02	16.71
GSMUA_Achr4P00520_001	Banana	cytosol	18.44	16.45
GSMUA_Achr9P30470_001	Banana	cytosol	18.44	16.37
HORVU6Hr1G007080.1	Barley	cytosol	4.03	16.09
GSMUA_Achr10P...	Banana	nucleus	18.73	14.94
GSMUA_Achr8P17960_001	Banana	nucleus	17.87	14.9
GSMUA_Achr11P...	Banana	cytosol	18.16	14.32
GSMUA_Achr3P01570_001	Banana	golgi	19.6	13.91
GSMUA_Achr2P14920_001	Banana	mitochondrion	18.73	13.6
GSMUA_Achr4P24130_001	Banana	nucleus	18.73	12.57
GSMUA_Achr4P03630_001	Banana	plasma membrane	20.46	8.36

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G24370_001	EnsemblPlants:GSMUA_Achr6P24370_001	EnsemblPlants:GSMUA_Achr6T24370_001	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	UniProt:M0T9T3	PFAM:PF00646	PFAM:PF01344
PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000296CD9A	:	:	:	:	:

Description

F-box/kelch-repeat protein SKIP30 [Source:GMGC_GENE;Acc:GSMUA_Achr6G24370_001]

Coordinates

chr6:-:25071402..25072815

Molecular Weight (calculated)

38451.5 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.010

Length

347 amino acids

Sequence
(BLAST)

001: MSPLIDGLPD EVAIQCLARV PFYFHPQLQL VCRSWRAVLR SPDIFKTHCE VGALEELLCV LAFEPENIWQ LYDPLQDRWI TLPIMPSEIR HLARFGVASV
101: GGKLFVIGGG SDRVDPLTGD HDRIFASNEV WSYDPFRCEW EQRAPMLVRR AMFACCALDG KIVVAGGFTN CRESIANAEI YDPQLDTWEP LPNLQHSHSS
201: ACSGVVIGGK MHVLHKGLST VQILEDGGKQ WDVKDYGWLQ GPMAVVHGEP YVLSNGCISK QCGQNLPDRV VSYASEFQSR IGFGMIGVGD EIYMIGGVIG
301: PGPRNQCIKQ LSDVDALNVR SERPTWRPLS PMTHCCGSIL GCAVLRI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.