Factsheet for Os10t0388200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82118	Sorghum	cytosol	91.35	91.09
Zm00001d014338_P001	Maize	cytosol	90.49	90.23
TraesCS7B01G234000.1	Wheat	cytosol	84.15	87.95
TraesCS6D01G195800.1	Wheat	cytosol	88.76	87.25
TraesCS6B01G243200.1	Wheat	cytosol	88.47	86.97
TraesCS6A01G211500.1	Wheat	extracellular, golgi	69.16	77.92
GSMUA_Achr6P24370_001	Banana	cytosol	76.37	76.37
VIT_07s0151g00770.t01	Wine grape	cytosol	63.98	64.35
PGSC0003DMT400049746	Potato	cytosol	63.11	63.48
Solyc09g065400.1.1	Tomato	cytosol	62.54	62.9
KRH32035	Soybean	cytosol	62.25	62.79
KRH71403	Soybean	cytosol	62.25	62.79
KRH67237	Soybean	cytosol	61.38	61.74
KRG95556	Soybean	cytosol	60.23	60.58
Solyc06g008690.1.1	Tomato	cytosol	60.23	60.58
PGSC0003DMT400013635	Potato	cytosol	59.94	60.29
CDY22982	Canola	cytosol	58.21	58.38
Bra001739.1-P	Field mustard	cytosol	57.93	58.09
CDX82306	Canola	cytosol	57.93	58.09
AT3G63220.2	Thale cress	cytosol	57.35	56.53
CDX99248	Canola	cytosol	56.2	56.03
Bra037535.1-P	Field mustard	cytosol	55.91	55.91
CDY58259	Canola	cytosol	55.62	55.62
CDY18573	Canola	cytosol	55.33	55.17
Os02t0504900-01	Rice	cytosol	25.36	22.86
Os02t0114600-02	Rice	cytosol	22.19	21.39
Os04t0380300-01	Rice	plastid	22.77	21.07
Os06t0655500-01	Rice	cytosol	22.48	20.31
Os07t0153400-01	Rice	mitochondrion	23.63	20.2
Os02t0574900-01	Rice	cytosol	25.07	18.91
Os02t0748300-01	Rice	cytosol	23.05	18.78
Os10t0363600-01	Rice	cytosol, plastid	25.65	18.74
Os10t0409900-01	Rice	plastid	23.05	18.1
Os03t0167800-02	Rice	cytosol	22.48	17.81
Os02t0202900-00	Rice	cytosol	22.19	17.66
Os03t0171600-01	Rice	cytosol	21.9	17.63
Os11t0602800-01	Rice	nucleus	21.9	17.59
HORVU6Hr1G007080.1	Barley	cytosol	4.03	16.09
Os04t0619300-01	Rice	cytosol, extracellular	21.9	15.97

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EntrezGene:4348513	ProteinID:ABB47473.1	EMBL:AK065918	ProteinID:BAF26408.1
ProteinID:BAT10645.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	EnsemblPlantsGene:Os10g0388200	EnsemblPlants:Os10t0388200-01
PFAM:PF00646	PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	UniProt:Q338Q9	SMART:SM00256
SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383	UniParc:UPI00005E1E05	RefSeq:XP_015612791.1	:

Description

F-box protein 549Kelch-type beta propeller domain containing protein. (Os10t0388200-01)

Coordinates

chr10:-:12815755..12818849

Molecular Weight (calculated)

38203.6 Da

IEP (calculated)

7.337

GRAVY (calculated)

0.052

Length

347 amino acids

Sequence
(BLAST)

001: MMSTLIDGLP NEVALQCLAR VPFLSHPVLQ MVCHSWRASV RNGELSKVRN QISATEDLLC VLAFEPENMW QLYDPLRDKW ITLPVMPSQI RNIARFGVAS
101: VAGKLYVIGG GSDRVDPLTG DHDRIFASNE VWSYDPLCRL WVQRAPMLVA RAMFACCALD GNIIVAGGFT NCRKSISKAE IYNPEADTWE PLPDLRQAHS
201: SACSGLVIKG KMHVLHKGLP TVQILEDGNA WAVEDYSWLQ GPMAMVRGEL YVLSNSCIMK QRGVNFPDKM VSCASEFQSR IGFGMIGLGD NIYLVGGVIG
301: PGPRNQCIKP LSDVDILNVT SERPTWLPGS PMTHCRGSIS GCALLRI

Best Arabidopsis Sequence Match ( AT3G63220.2 )
(BLAST)

001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.