Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH32035 | Soybean | cytosol | 81.16 | 81.4 |
| KRH67237 | Soybean | cytosol | 80.87 | 80.87 |
| KRH71403 | Soybean | cytosol | 80.0 | 80.23 |
| KRG95556 | Soybean | cytosol | 80.0 | 80.0 |
| Solyc09g065400.1.1 | Tomato | cytosol | 78.26 | 78.26 |
| PGSC0003DMT400049746 | Potato | cytosol | 77.97 | 77.97 |
| CDX82306 | Canola | cytosol | 73.04 | 72.83 |
| CDY22982 | Canola | cytosol | 73.04 | 72.83 |
| Solyc06g008690.1.1 | Tomato | cytosol | 72.75 | 72.75 |
| Bra001739.1-P | Field mustard | cytosol | 72.75 | 72.54 |
| PGSC0003DMT400013635 | Potato | cytosol | 72.46 | 72.46 |
| AT3G63220.2 | Thale cress | cytosol | 73.62 | 72.16 |
| CDY58259 | Canola | cytosol | 69.86 | 69.45 |
| Bra037535.1-P | Field mustard | cytosol | 69.57 | 69.16 |
| CDX99248 | Canola | cytosol | 69.57 | 68.97 |
| CDY18573 | Canola | cytosol | 69.28 | 68.68 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 64.93 | 64.55 |
| Os10t0388200-01 | Rice | cytosol | 64.35 | 63.98 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 64.93 | 63.46 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 64.64 | 63.17 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 60.58 | 62.95 |
| OQU82118 | Sorghum | cytosol | 63.48 | 62.93 |
| Zm00001d014338_P001 | Maize | cytosol | 63.19 | 62.64 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 51.88 | 58.12 |
| VIT_15s0046g02790.t01 | Wine grape | cytosol | 22.61 | 28.26 |
| VIT_15s0046g02710.t01 | Wine grape | cytosol | 25.51 | 24.51 |
| VIT_04s0008g02380.t01 | Wine grape | cytosol, peroxisome, plastid | 25.22 | 23.51 |
| VIT_01s0010g03320.t01 | Wine grape | cytosol | 25.22 | 22.6 |
| VIT_18s0001g04730.t01 | Wine grape | cytosol, plastid | 27.83 | 20.13 |
| VIT_12s0055g00910.t01 | Wine grape | cytosol | 27.54 | 19.83 |
| VIT_06s0004g02980.t01 | Wine grape | cytosol | 20.87 | 19.78 |
| VIT_11s0016g05050.t01 | Wine grape | cytosol | 24.35 | 19.63 |
| VIT_10s0003g03730.t01 | Wine grape | cytosol | 13.04 | 19.57 |
| VIT_16s0039g01470.t01 | Wine grape | cytosol | 21.74 | 19.53 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 24.06 | 18.99 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 4.35 | 17.24 |
| VIT_17s0000g05920.t01 | Wine grape | cytosol | 21.74 | 16.93 |
| VIT_14s0068g02150.t01 | Wine grape | cytosol | 22.61 | 16.35 |
| VIT_01s0026g02080.t01 | Wine grape | nucleus | 20.87 | 13.31 |
Protein Annotations
| EntrezGene:100855343 | wikigene:100855343 | Gene3D:2.120.10.80 | MapMan:35.1 | ProteinID:CCB51896 | ProteinID:CCB51896.1 |
| InterPro:F-box_dom | UniProt:F6HI50 | EMBL:FN595764 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0015074 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | EntrezGene:LOC100855343 |
| wikigene:LOC100855343 | PFAM:PF00646 | PFAM:PF01344 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | SMART:SM00256 |
| SMART:SM00612 | SUPFAM:SSF117281 | TIGR:TC58845 | UniParc:UPI00019838DB | ArrayExpress:VIT_07s0151g00770 | EnsemblPlantsGene:VIT_07s0151g00770 |
| EnsemblPlants:VIT_07s0151g00770.t01 | RefSeq:XP_003632309 | RefSeq:XP_003632309.1 | RefSeq:XP_003632310 | RefSeq:XP_003632310.1 | RefSeq:XP_003632311 |
| RefSeq:XP_003632311.1 | RefSeq:XP_003633989 | RefSeq:XP_003633989.1 | RefSeq:XP_010651986.1 | RefSeq:XP_010651987.1 | RefSeq:XP_010651988.1 |
Description
No Description!
Coordinates
chr7:+:1055841..1060554
Molecular Weight (calculated)
38385.5 Da
IEP (calculated)
7.449
GRAVY (calculated)
-0.003
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLIEGLPD AVALRCLAWV PFYLHPRLEL VSRSWRDAIR GPELFKARQE VGSSEDLLCV CAFDPENLWQ LYDPRKDLWI SLPVLPSRIR HLAHFGAVST
101: AGKLFVLGGG SDAVDPLTGD QDGSFATNEV WSYDPIIRQW APRAPMLVPR AMFACCVLDG KIVVAGGFTS CRKSISQAEI YDPEKDAWVS IPDLHRTHNS
201: ACSGVVLDGK VHVLHKGLTT VQILDKVGPG WRVEDYGWLQ GPMAIVQGAL YVMSHGIIFK QEREVKKMVV SASEFRRRIG FAMTGLRDEI YVIGGVIGPD
301: RWNWDIKPLS DVDVLTIGSE RPAWRQVSPM SQCRGTIFGC TQLRI
101: AGKLFVLGGG SDAVDPLTGD QDGSFATNEV WSYDPIIRQW APRAPMLVPR AMFACCVLDG KIVVAGGFTS CRKSISQAEI YDPEKDAWVS IPDLHRTHNS
201: ACSGVVLDGK VHVLHKGLTT VQILDKVGPG WRVEDYGWLQ GPMAIVQGAL YVMSHGIIFK QEREVKKMVV SASEFRRRIG FAMTGLRDEI YVIGGVIGPD
301: RWNWDIKPLS DVDVLTIGSE RPAWRQVSPM SQCRGTIFGC TQLRI
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.