Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G243200.1 | Wheat | cytosol | 99.72 | 99.72 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 93.48 | 99.4 |
| OQU82118 | Sorghum | cytosol | 87.54 | 88.79 |
| Os10t0388200-01 | Rice | cytosol | 87.25 | 88.76 |
| Zm00001d014338_P001 | Maize | cytosol | 86.97 | 88.22 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 76.49 | 87.66 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 73.65 | 74.93 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 63.17 | 64.64 |
| KRH32035 | Soybean | cytosol | 61.19 | 62.79 |
| KRH71403 | Soybean | cytosol | 60.91 | 62.5 |
| PGSC0003DMT400049746 | Potato | cytosol | 60.62 | 62.03 |
| Solyc09g065400.1.1 | Tomato | cytosol | 60.62 | 62.03 |
| KRH67237 | Soybean | cytosol | 60.34 | 61.74 |
| KRG95556 | Soybean | cytosol | 59.49 | 60.87 |
| Solyc06g008690.1.1 | Tomato | cytosol | 58.36 | 59.71 |
| PGSC0003DMT400013635 | Potato | cytosol | 58.07 | 59.42 |
| CDY22982 | Canola | cytosol | 58.07 | 59.25 |
| Bra001739.1-P | Field mustard | cytosol | 57.51 | 58.67 |
| CDX82306 | Canola | cytosol | 57.51 | 58.67 |
| AT3G63220.2 | Thale cress | cytosol | 57.79 | 57.95 |
| CDX99248 | Canola | cytosol | 56.09 | 56.9 |
| Bra037535.1-P | Field mustard | cytosol | 55.52 | 56.48 |
| CDY58259 | Canola | cytosol | 54.96 | 55.91 |
| CDY18573 | Canola | cytosol | 54.67 | 55.46 |
| TraesCS3D01G439000.1 | Wheat | cytosol | 26.06 | 23.96 |
| TraesCS2D01G279700.1 | Wheat | mitochondrion | 25.21 | 23.24 |
| TraesCS4D01G286700.1 | Wheat | cytosol | 21.25 | 22.73 |
| TraesCS6D01G043400.1 | Wheat | cytosol | 24.08 | 22.25 |
| TraesCS2D01G499800.1 | Wheat | mitochondrion | 23.23 | 20.25 |
| TraesCS7D01G483900.1 | Wheat | cytosol | 20.96 | 19.32 |
| TraesCS7D01G016400.1 | Wheat | cytosol, plastid | 24.93 | 19.3 |
| TraesCS4D01G282200.1 | Wheat | cytosol | 22.38 | 18.94 |
| TraesCS6D01G167900.1 | Wheat | plastid | 22.38 | 18.68 |
| TraesCS7D01G005100.1 | Wheat | cytosol | 11.33 | 18.6 |
| TraesCS7D01G007100.1 | Wheat | cytosol | 19.55 | 18.55 |
| TraesCS3D01G540000.1 | Wheat | cytosol | 22.38 | 18.5 |
| TraesCS1D01G136700.1 | Wheat | nucleus | 24.08 | 18.2 |
| TraesCS6D01G285100.1 | Wheat | cytosol, nucleus, plastid | 21.25 | 17.65 |
| TraesCS2D01G463000.1 | Wheat | cytosol | 21.81 | 17.23 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.68 | 14.94 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G195800.1 | EnsemblPlantsGene:TraesCS6D01G195800 | Gene3D:2.120.10.80 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | PFAM:PF00646 | PFAM:PF01344 | SMART:SM00256 | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:271300810..271304725
Molecular Weight (calculated)
38776.0 Da
IEP (calculated)
6.601
GRAVY (calculated)
0.025
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MVECTMVSTL LDGLPNEVAL QCLARVPFVS HPILQLVCRS WRASVRNGEL LNVRNQIGAT EELLCVLAFE PENIWQLYDP RRDKWITLPV MPSQIRNIAR
101: FGVASVAGKL YVIGGGSDRV DPLTGDHDTI FASNEVWSYD PLHRLWAQRA PMLVARAMFA CCALDGKIIV AGGFTNCRKS ISEAEIYDPE ADTWESLPDL
201: RQAHPSACSG LVIKDKMHVL HKGISTVQIL EDGGNYWAVE DYSWLQGPMA MVGGELYVLS NSCIRKQHGE NFPDKMVPCA SGFQSRIGFG MIGLGDSICL
301: FGGVIGPGPR NQCIKPLSDV DILNVASERP TWRQGSPMTR CRGSIAGCAL LKI
101: FGVASVAGKL YVIGGGSDRV DPLTGDHDTI FASNEVWSYD PLHRLWAQRA PMLVARAMFA CCALDGKIIV AGGFTNCRKS ISEAEIYDPE ADTWESLPDL
201: RQAHPSACSG LVIKDKMHVL HKGISTVQIL EDGGNYWAVE DYSWLQGPMA MVGGELYVLS NSCIRKQHGE NFPDKMVPCA SGFQSRIGFG MIGLGDSICL
301: FGGVIGPGPR NQCIKPLSDV DILNVASERP TWRQGSPMTR CRGSIAGCAL LKI
001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.