CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67237	Soybean	cytosol	96.52	96.52
KRH32035	Soybean	cytosol	86.67	86.92
KRH71403	Soybean	cytosol	86.67	86.92
VIT_07s0151g00770.t01	Wine grape	cytosol	80.0	80.0
Solyc09g065400.1.1	Tomato	cytosol	77.68	77.68
PGSC0003DMT400049746	Potato	cytosol	77.39	77.39
PGSC0003DMT400013635	Potato	cytosol	71.01	71.01
Solyc06g008690.1.1	Tomato	cytosol	70.72	70.72
CDX82306	Canola	cytosol	69.28	69.08
Bra001739.1-P	Field mustard	cytosol	68.99	68.79
CDY22982	Canola	cytosol	68.99	68.79
AT3G63220.2	Thale cress	cytosol	68.99	67.61
Bra037535.1-P	Field mustard	cytosol	67.54	67.15
CDY18573	Canola	cytosol	66.67	66.09
CDY58259	Canola	cytosol	66.38	65.99
CDX99248	Canola	cytosol	65.51	64.94
GSMUA_Achr6P24370_001	Banana	cytosol	63.48	63.11
OQU82118	Sorghum	cytosol	61.16	60.63
Zm00001d014338_P001	Maize	cytosol	61.16	60.63
Os10t0388200-01	Rice	cytosol	60.58	60.23
TraesCS7B01G234000.1	Wheat	cytosol	57.39	59.64
TraesCS6D01G195800.1	Wheat	cytosol	60.87	59.49
TraesCS6B01G243200.1	Wheat	cytosol	60.87	59.49
TraesCS6A01G211500.1	Wheat	extracellular, golgi	47.83	53.57
KRH48153	Soybean	cytosol	24.06	22.93
KRH48156	Soybean	cytosol	23.77	22.65
KRH31463	Soybean	cytosol	24.64	22.08
KRG97442	Soybean	cytosol, nucleus, peroxisome	23.48	21.89
KRH65052	Soybean	cytosol	20.0	21.56
KRH48154	Soybean	cytosol	22.9	21.47
KRH42654	Soybean	cytosol	24.06	21.39
KRH61941	Soybean	plastid	21.74	21.37
KRH11716	Soybean	cytosol, golgi, plastid	22.9	21.24
KRH65051	Soybean	cytosol	20.0	21.04
KRH11179	Soybean	mitochondrion, plastid	24.35	20.74
KRH26429	Soybean	cytosol	21.74	20.6
KRH52601	Soybean	extracellular, golgi	23.77	20.55
KRH21075	Soybean	mitochondrion	24.06	20.49
KRH18847	Soybean	cytosol	27.83	20.21
KRH42190	Soybean	cytosol, plastid	28.12	20.17
KRG93237	Soybean	cytosol	24.93	20.09
KRH56558	Soybean	cytosol	24.93	20.09
KRH22905	Soybean	cytosol	22.61	20.05
KRH58301	Soybean	cytosol	27.54	19.75
KRH58897	Soybean	cytosol	24.64	19.45
KRH12864	Soybean	cytosol, plasma membrane	18.26	19.38
KRG93186	Soybean	cytosol	22.32	19.35
KRH42810	Soybean	cytosol	24.35	19.22
KRH57678	Soybean	cytosol	21.74	19.04
KRH16647	Soybean	cytosol, plastid	26.09	18.87
KRH53131	Soybean	cytosol	25.8	18.7
KRH62415	Soybean	cytosol	14.78	18.48
KRH36711	Soybean	cytosol	21.45	18.36
KRH24879	Soybean	cytosol	20.87	18.14
KRH06951	Soybean	cytosol	20.87	17.82
KRG94518	Soybean	mitochondrion	20.29	17.46
KRH03453	Soybean	cytosol	20.29	17.16
KRH29930	Soybean	cytosol	17.1	17.0
KRH56929	Soybean	cytosol	20.0	16.95
KRH54527	Soybean	cytosol	20.58	16.1
KRH63378	Soybean	cytosol	20.29	15.87
KRH72270	Soybean	cytosol	5.8	15.27
KRH55297	Soybean	cytosol	12.46	14.68
KRH74828	Soybean	cytosol	20.87	13.41
KRH45883	Soybean	cytosol	20.87	13.36
KRH70694	Soybean	cytosol	20.87	13.36
KRG99114	Soybean	cytosol	20.0	12.8
HORVU6Hr1G007080.1	Barley	cytosol	3.19	12.64

Protein Annotations

EMBL:ACUP02012119	EnsemblPlants:KRG95556	EnsemblPlantsGene:GLYMA_19G158300	EntrezGene:100788983	Gene3D:2.120.10.80	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PANTHER:PTHR24414
PANTHER:PTHR24414:SF29	PFAM:PF01344	ProteinID:KRG95556	ProteinID:KRG95556.1	SMART:SM00612	SUPFAM:SSF117281
UniParc:UPI000233ED2E	UniProt:I1N9J4	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:41895656..41901708

Molecular Weight (calculated)

37976.9 Da

IEP (calculated)

5.860

GRAVY (calculated)

0.074

Length

345 amino acids

Sequence
(BLAST)

001: MSGLIEGLPD AVAIRCLARV PFYLHPVLEL VSRSWQAAIC SPELFKARQE VGSTEDLLCV CAFDPENLWQ LYDPMQDLWI TLPVLPSKIR HLSNFGAVST
101: AGKLFVIGGG SDAVDPLTGD QDGCFATDEV WSYDPVAREW ASRASMLVPR SMFACCVLNG KIVVAGGFTS CRKSISQSEM YDPDKDIWIP MPDLHRTHNS
201: ACSGVVIGGK VHVLHKDMST VQVLDNAGPG WTVEECVWLQ GQMAVVGDAL YVMSHGLIFK QDKEVRKVVG SASEFRKRIG FAMTGLGDDL YVIGGFIGPD
301: RWNWDIKPLS EVDVLTLGSE RPTWRQAARM TRCHGTILGC TLLRI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.