Factsheet for TraesCS7B01G234000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G195800.1	Wheat	cytosol	99.4	93.48
TraesCS6B01G243200.1	Wheat	cytosol	99.1	93.2
OQU82118	Sorghum	cytosol	88.25	84.2
Os10t0388200-01	Rice	cytosol	87.95	84.15
Zm00001d014338_P001	Maize	cytosol	87.65	83.62
TraesCS6A01G211500.1	Wheat	extracellular, golgi	75.9	81.82
GSMUA_Achr6P24370_001	Banana	cytosol	73.49	70.32
VIT_07s0151g00770.t01	Wine grape	cytosol	62.95	60.58
KRH32035	Soybean	cytosol	61.14	59.01
KRH71403	Soybean	cytosol	60.84	58.72
Solyc09g065400.1.1	Tomato	cytosol	60.84	58.55
PGSC0003DMT400049746	Potato	cytosol	60.84	58.55
KRH67237	Soybean	cytosol	60.54	58.26
KRG95556	Soybean	cytosol	59.64	57.39
Solyc06g008690.1.1	Tomato	cytosol	58.43	56.23
PGSC0003DMT400013635	Potato	cytosol	58.13	55.94
CDY22982	Canola	cytosol	57.83	55.49
AT3G63220.2	Thale cress	cytosol	58.43	55.11
Bra001739.1-P	Field mustard	cytosol	57.23	54.91
CDX82306	Canola	cytosol	57.23	54.91
CDX99248	Canola	cytosol	56.02	53.45
Bra037535.1-P	Field mustard	cytosol	55.12	52.74
CDY58259	Canola	cytosol	54.52	52.16
CDY18573	Canola	cytosol	54.22	51.72
TraesCS3B01G481500.1	Wheat	cytosol, plastid	25.3	21.88
TraesCS2B01G298300.1	Wheat	mitochondrion	25.0	21.67
TraesCS6B01G052900.2	Wheat	cytosol	24.7	21.47
TraesCS1B01G154600.1	Wheat	plastid	25.0	18.95
TraesCS4B01G283500.1	Wheat	cytosol	24.4	18.79
TraesCS4B01G283400.1	Wheat	cytosol	24.1	18.6
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	25.6	18.48
TraesCS3B01G611700.1	Wheat	cytosol	23.49	18.27
TraesCS6B01G334300.1	Wheat	cytosol, nucleus, plastid	22.29	17.41
TraesCS2B01G484200.1	Wheat	cytosol	23.49	17.37
TraesCS6B01G209700.1	Wheat	cytosol	21.69	17.02
HORVU6Hr1G007080.1	Barley	cytosol	3.92	14.94

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646
PFAM:PF01344	PANTHER:PTHR24414	PANTHER:PTHR24414:SF29	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281
SUPFAM:SSF81383	EnsemblPlantsGene:TraesCS7B01G234000	EnsemblPlants:TraesCS7B01G234000.1	:	:	:

Description

No Description!

Coordinates

chr7B:+:437930756..437931802

Molecular Weight (calculated)

36473.5 Da

IEP (calculated)

7.759

GRAVY (calculated)

0.048

Length

332 amino acids

Sequence
(BLAST)

001: MVSTLLDGLP NEVALQCLAR VPFVSHPILQ LVCRSWRASV RNGELLNVRN QIGATEELLC VLAFEPENIW QLYDPCRDKW ITLPVMPSQI RNIARFGVAS
101: VAGKLYVIGG GSDRVWSYDP LHRLWAQRAP MLVARAMFAC CALDGKIIVA GGFKNCRKSI SEAEIYDPEA DTWESLPDLR QAHPSACSGL VIKDKMHVLH
201: KGISTVQILE DGGNYWAVED YSWLQGPMAM VGGELYVLSN SCIRKQHGEN FPDKMVPCAS GFQSRIGFGM IGLGDSICLF GGVIGPGPRN QCIKPLSDVD
301: ILNVASERPT WRQGSPMTRC RGSIAGCALL KI

Best Arabidopsis Sequence Match ( AT3G63220.1 )
(BLAST)

001: MSGLLDGIPE AVALRCLAHV PLHLHPNLEL VSRSWRAAIR SHELFRVRKE LRSSEHLLCV CAFDPENIWQ VYSPNCDRWL TLPLLPSRIR HLAHFGAVTT
101: AGMLFVLGGG SDAVSPVTGD HDGTFATDQV WSYDFVQRQW TPRASMLVPR AMFACCVLQG KIVVAGGFTT CRKSISGAEM YDPENDVWTS IPDLHQTHNS
201: ACSGLVVNGK VHVLHKGLST VQVLESVKLG WDVKDYGWPQ GPMVVVEDVL YVMSHGLVFK QEGDTWKMVA SASEFKRRIG MAMTSLSDEV LIVGGVIGPD
301: RLNWDIKPLS DVDALTVGND RPAWRSVAPM TRCRGTILGC TQLTI

Arabidopsis Description

SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.