Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82306 | Canola | cytosol | 97.4 | 97.4 |
| CDX99248 | Canola | cytosol | 88.44 | 87.93 |
| CDY58259 | Canola | cytosol | 86.13 | 85.88 |
| AT3G63220.2 | Thale cress | cytosol | 86.99 | 85.51 |
| CDY18573 | Canola | cytosol | 85.84 | 85.34 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 72.83 | 73.04 |
| Solyc09g065400.1.1 | Tomato | cytosol | 71.1 | 71.3 |
| PGSC0003DMT400049746 | Potato | cytosol | 70.81 | 71.01 |
| KRH67237 | Soybean | cytosol | 69.65 | 69.86 |
| KRH32035 | Soybean | cytosol | 68.79 | 69.19 |
| KRH71403 | Soybean | cytosol | 68.79 | 69.19 |
| KRG95556 | Soybean | cytosol | 68.79 | 68.99 |
| PGSC0003DMT400013635 | Potato | cytosol | 65.32 | 65.51 |
| Solyc06g008690.1.1 | Tomato | cytosol | 65.32 | 65.51 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 59.54 | 58.36 |
| OQU82118 | Sorghum | cytosol | 58.67 | 58.33 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 58.38 | 58.21 |
| Os10t0388200-01 | Rice | cytosol | 58.38 | 58.21 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 59.25 | 58.07 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 55.49 | 57.83 |
| Zm00001d014338_P001 | Maize | cytosol | 58.09 | 57.76 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 47.69 | 53.57 |
| CDX81755 | Canola | cytosol | 30.64 | 27.18 |
| CDY33348 | Canola | cytosol | 13.87 | 26.67 |
| CDX96822 | Canola | extracellular, vacuole | 31.21 | 25.0 |
| CDY35074 | Canola | cytosol | 15.03 | 24.88 |
| CDY34765 | Canola | cytosol | 25.72 | 23.92 |
| CDX76807 | Canola | cytosol | 25.43 | 23.85 |
| CDY51562 | Canola | cytosol | 23.99 | 23.12 |
| CDY58793 | Canola | cytosol | 23.7 | 22.84 |
| CDY12647 | Canola | cytosol | 23.7 | 22.65 |
| CDY17172 | Canola | cytosol | 9.25 | 22.22 |
| CDY31534 | Canola | cytosol | 23.7 | 21.87 |
| CDY01301 | Canola | cytosol | 9.83 | 21.66 |
| CDX80156 | Canola | cytosol | 23.7 | 21.64 |
| CDY70379 | Canola | cytosol | 9.83 | 21.52 |
| CDY01812 | Canola | cytosol | 22.83 | 21.18 |
| CDX96091 | Canola | cytosol | 22.54 | 20.91 |
| CDX99882 | Canola | mitochondrion, plastid | 23.99 | 20.85 |
| CDY26295 | Canola | mitochondrion, plastid | 23.7 | 20.6 |
| CDY35075 | Canola | cytosol | 10.69 | 20.11 |
| CDY64883 | Canola | golgi, plastid | 23.41 | 19.71 |
| CDX90085 | Canola | plastid | 18.79 | 18.84 |
| CDY11811 | Canola | plastid | 18.5 | 18.55 |
| CDX96551 | Canola | cytosol | 21.68 | 18.47 |
| CDY52247 | Canola | cytosol | 17.05 | 18.44 |
| CDY70128 | Canola | cytosol | 17.92 | 18.4 |
| CDY24045 | Canola | mitochondrion | 23.12 | 18.39 |
| CDY01300 | Canola | cytosol | 11.85 | 18.3 |
| CDX68177 | Canola | cytosol | 21.97 | 18.23 |
| CDX73096 | Canola | cytosol | 21.1 | 18.2 |
| CDY64382 | Canola | plastid | 17.92 | 18.13 |
| CDY03923 | Canola | cytosol | 17.63 | 18.05 |
| CDY36145 | Canola | cytosol | 18.21 | 18.0 |
| CDY33062 | Canola | mitochondrion, plastid | 22.54 | 17.93 |
| CDY15708 | Canola | cytosol | 17.63 | 17.78 |
| CDY00415 | Canola | mitochondrion | 10.98 | 17.76 |
| CDY10574 | Canola | cytosol | 22.25 | 17.7 |
| CDY66857 | Canola | cytosol | 18.21 | 17.7 |
| CDY33754 | Canola | nucleus | 12.72 | 17.6 |
| CDX85842 | Canola | cytosol | 21.68 | 17.56 |
| CDY02451 | Canola | cytosol | 21.97 | 17.47 |
| CDY26117 | Canola | cytosol | 21.68 | 17.24 |
| CDY08233 | Canola | mitochondrion | 21.68 | 17.24 |
| CDY04697 | Canola | cytosol | 10.98 | 17.04 |
| CDY60836 | Canola | cytosol | 18.5 | 16.84 |
| CDY30645 | Canola | nucleus | 10.69 | 16.59 |
| CDY54825 | Canola | cytosol | 9.25 | 16.58 |
| CDY16205 | Canola | nucleus | 20.23 | 16.55 |
| CDX81631 | Canola | nucleus | 19.36 | 16.38 |
| CDX90239 | Canola | cytosol | 18.79 | 16.37 |
| CDY62015 | Canola | nucleus | 19.36 | 16.14 |
| CDY46430 | Canola | cytosol | 19.65 | 15.96 |
| CDY17425 | Canola | cytosol | 18.5 | 15.96 |
| CDY52764 | Canola | cytosol | 19.36 | 15.76 |
| CDY49979 | Canola | cytosol | 18.5 | 15.69 |
| CDY49094 | Canola | nucleus | 19.08 | 15.57 |
| CDY62176 | Canola | nucleus | 19.94 | 15.44 |
| CDX82682 | Canola | cytosol | 13.87 | 15.34 |
| CDY34175 | Canola | cytosol | 18.21 | 15.33 |
| CDY09349 | Canola | nucleus | 19.65 | 15.32 |
| CDY28493 | Canola | cytosol | 17.92 | 15.09 |
| CDY15707 | Canola | cytosol, plastid | 15.32 | 15.01 |
| CDY65956 | Canola | cytosol | 8.09 | 14.89 |
| CDY45190 | Canola | nucleus | 19.36 | 14.79 |
| CDY03028 | Canola | cytosol | 19.08 | 14.7 |
| CDY13683 | Canola | cytosol | 17.92 | 14.32 |
| CDY52395 | Canola | cytosol | 17.63 | 14.09 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.47 | 13.79 |
| CDY64780 | Canola | cytosol | 16.76 | 13.36 |
| CDY63005 | Canola | cytosol | 15.9 | 13.19 |
| CDY69929 | Canola | cytosol | 15.9 | 13.19 |
| CDY36146 | Canola | cytosol | 15.9 | 13.19 |
| CDY12345 | Canola | cytosol | 17.05 | 12.97 |
| CDY66938 | Canola | cytosol, mitochondrion | 6.36 | 12.5 |
| CDY33755 | Canola | cytosol | 4.34 | 12.2 |
| CDY49977 | Canola | cytosol | 16.47 | 12.13 |
| CDY03921 | Canola | cytosol, extracellular, plasma membrane | 11.56 | 11.33 |
| CDY53460 | Canola | cytosol | 5.49 | 10.8 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | UniProt:A0A078GD54 | EnsemblPlants:CDY22982 | ProteinID:CDY22982 | ProteinID:CDY22982.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00021400001 |
| InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | PFAM:PF00646 | PFAM:PF01344 |
| PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI0004EDBEBD | SEG:seg | : | : | : | : |
Description
BnaC03g40870DBnaC03g40870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GD54]
Coordinates
chrLK032138:-:376877..378981
Molecular Weight (calculated)
38166.0 Da
IEP (calculated)
6.823
GRAVY (calculated)
-0.058
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLLEGIPD AVALRCLAHV PLHHHPNLEL VSRSWRSAIR SDELFKVRSE EKSSENLLCV CAFDPENIWQ VYSPNCNRWL TLPLLPSRIR HLAHFGAVTA
101: AGKLFVLGGG SDAVDPLTGD HDGTFATDEV WCYDFVKRRW TQRASMLVPR SMFACCVLDG KIIVAGGFTT CRKSISGAEM YDPESDVWDS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLSS VQVLESVKLG WAVKEYGWPQ GPMAVVEDVP YVMSHGVVYK QEEDDTWKMV ASASEFKPRI GMAMTSLSDE VLLVGGVIGP
301: DRHNWDIKPL SDVDVLSVGS DRPAWRKVAP MTKCRGTVLG CTQLTI
101: AGKLFVLGGG SDAVDPLTGD HDGTFATDEV WCYDFVKRRW TQRASMLVPR SMFACCVLDG KIIVAGGFTT CRKSISGAEM YDPESDVWDS IPDLHRTHNS
201: ACSGLVVKGK VHVLHKGLSS VQVLESVKLG WAVKEYGWPQ GPMAVVEDVP YVMSHGVVYK QEEDDTWKMV ASASEFKPRI GMAMTSLSDE VLLVGGVIGP
301: DRHNWDIKPL SDVDVLSVGS DRPAWRKVAP MTKCRGTVLG CTQLTI
001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
Arabidopsis Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.