Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22982 | Canola | cytosol | 85.51 | 86.99 |
| CDX82306 | Canola | cytosol | 84.66 | 86.13 |
| Bra001739.1-P | Field mustard | cytosol | 84.38 | 85.84 |
| CDX99248 | Canola | cytosol | 82.39 | 83.33 |
| Bra037535.1-P | Field mustard | cytosol | 80.97 | 82.13 |
| CDY58259 | Canola | cytosol | 80.4 | 81.56 |
| CDY18573 | Canola | cytosol | 79.83 | 80.75 |
| VIT_07s0151g00770.t01 | Wine grape | cytosol | 72.16 | 73.62 |
| Solyc09g065400.1.1 | Tomato | cytosol | 70.17 | 71.59 |
| PGSC0003DMT400049746 | Potato | cytosol | 69.6 | 71.01 |
| KRH67237 | Soybean | cytosol | 68.75 | 70.14 |
| KRH71403 | Soybean | cytosol | 68.47 | 70.06 |
| KRH32035 | Soybean | cytosol | 68.47 | 70.06 |
| KRG95556 | Soybean | cytosol | 67.61 | 68.99 |
| PGSC0003DMT400013635 | Potato | cytosol | 65.06 | 66.38 |
| Solyc06g008690.1.1 | Tomato | cytosol | 65.06 | 66.38 |
| TraesCS7B01G234000.1 | Wheat | cytosol | 55.11 | 58.43 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 57.39 | 58.21 |
| TraesCS6B01G243200.1 | Wheat | cytosol | 58.24 | 58.07 |
| TraesCS6D01G195800.1 | Wheat | cytosol | 57.95 | 57.79 |
| Os10t0388200-01 | Rice | cytosol | 56.53 | 57.35 |
| OQU82118 | Sorghum | cytosol | 56.53 | 57.18 |
| Zm00001d014338_P001 | Maize | cytosol | 55.97 | 56.61 |
| TraesCS6A01G211500.1 | Wheat | extracellular, golgi | 46.31 | 52.92 |
| AT1G16250.2 | Thale cress | cytosol | 28.69 | 26.37 |
| AT2G24540.1 | Thale cress | cytosol | 24.72 | 23.39 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 23.3 | 21.81 |
| AT3G61350.2 | Thale cress | cytosol | 21.59 | 21.23 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 23.01 | 20.35 |
| AT5G60570.2 | Thale cress | cytosol | 22.44 | 20.1 |
| AT1G55270.1 | Thale cress | mitochondrion | 23.01 | 18.66 |
| AT1G22040.1 | Thale cress | plastid | 25.0 | 18.53 |
| AT1G74510.2 | Thale cress | cytosol | 23.01 | 17.96 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 17.05 | 17.34 |
| AT1G26930.1 | Thale cress | cytosol | 19.89 | 16.63 |
| HORVU6Hr1G007080.1 | Barley | cytosol | 3.98 | 16.09 |
| AT3G27150.1 | Thale cress | cytosol | 19.03 | 15.88 |
| AT1G14330.1 | Thale cress | nucleus | 19.6 | 15.65 |
| AT5G40680.1 | Thale cress | mitochondrion | 16.76 | 14.22 |
| AT2G02870.1 | Thale cress | nucleus | 18.75 | 14.13 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:35.1 | EntrezGene:825497 | ProteinID:AEE80449.1 | ProteinID:AEE80450.1 | EMBL:AK229127 |
| ProteinID:ANM64823.1 | ArrayExpress:AT3G63220 | EnsemblPlantsGene:AT3G63220 | RefSeq:AT3G63220 | TAIR:AT3G63220 | RefSeq:AT3G63220-TAIR-G |
| EnsemblPlants:AT3G63220.2 | TAIR:AT3G63220.2 | EMBL:AY087726 | Unigene:At.1302 | ProteinID:CAB86423.1 | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller |
| InterPro:Kelch_1 | RefSeq:NP_001326828.1 | RefSeq:NP_191881.1 | RefSeq:NP_974481.1 | PFAM:PF01344 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR24414 | PANTHER:PTHR24414:SF29 | UniProt:Q9M1W7 |
| SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | UniParc:UPI000034F051 | : | : |
Description
SKIP30F-box/kelch-repeat protein SKIP30 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1W7]
Coordinates
chr3:-:23357328..23359148
Molecular Weight (calculated)
38982.2 Da
IEP (calculated)
7.130
GRAVY (calculated)
0.027
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MCYRQETMSG LLDGIPEAVA LRCLAHVPLH LHPNLELVSR SWRAAIRSHE LFRVRKELRS SEHLLCVCAF DPENIWQVYS PNCDRWLTLP LLPSRIRHLA
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
101: HFGAVTTAGM LFVLGGGSDA VSPVTGDHDG TFATDQVWSY DFVQRQWTPR ASMLVPRAMF ACCVLQGKIV VAGGFTTCRK SISGAEMYDP ENDVWTSIPD
201: LHQTHNSACS GLVVNGKVHV LHKGLSTVQV LESVKLGWDV KDYGWPQGPM VVVEDVLYVM SHGLVFKQEG DTWKMVASAS EFKRRIGMAM TSLSDEVLIV
301: GGVIGPDRLN WDIKPLSDVD ALTVGNDRPA WRSVAPMTRC RGTILGCTQL TI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.