Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26117 | Canola | cytosol | 96.08 | 95.86 |
| CDY10574 | Canola | cytosol | 96.08 | 95.86 |
| CDY02451 | Canola | cytosol | 96.08 | 95.86 |
| Bra030872.1-P | Field mustard | cytosol | 95.85 | 95.63 |
| Bra011908.1-P | Field mustard | mitochondrion | 95.85 | 95.63 |
| CDY08233 | Canola | mitochondrion | 95.39 | 95.17 |
| CDY33062 | Canola | mitochondrion, plastid | 88.02 | 87.82 |
| CDY24045 | Canola | mitochondrion | 87.79 | 87.59 |
| Bra037989.1-P | Field mustard | cytosol, plastid | 87.56 | 87.36 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 81.34 | 80.78 |
| Solyc01g005970.2.1 | Tomato | cytosol | 80.18 | 79.63 |
| PGSC0003DMT400081852 | Potato | cytosol | 79.95 | 79.41 |
| PGSC0003DMT400034149 | Potato | cytosol | 78.34 | 77.8 |
| Solyc01g022740.2.1 | Tomato | cytosol | 77.88 | 77.35 |
| KRH42810 | Soybean | cytosol | 77.42 | 76.89 |
| KRH58897 | Soybean | cytosol | 77.19 | 76.66 |
| GSMUA_Achr7P27010_001 | Banana | cytosol | 69.35 | 72.36 |
| GSMUA_Achr3P29560_001 | Banana | cytosol | 68.43 | 72.26 |
| Zm00001d032991_P001 | Maize | cytosol | 70.28 | 69.79 |
| EER91632 | Sorghum | plastid | 69.82 | 69.34 |
| Os10t0409900-01 | Rice | plastid | 70.05 | 68.78 |
| Os03t0167800-02 | Rice | cytosol | 69.12 | 68.49 |
| TraesCS1B01G154600.1 | Wheat | plastid | 68.89 | 68.26 |
| TraesCS4D01G282200.1 | Wheat | cytosol | 65.21 | 67.87 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 67.05 | 67.67 |
| TraesCS3D01G540000.1 | Wheat | cytosol | 65.67 | 66.74 |
| TraesCS3B01G611700.1 | Wheat | cytosol | 65.67 | 66.74 |
| TraesCS4B01G283400.1 | Wheat | cytosol | 66.13 | 66.74 |
| TraesCS4B01G283500.1 | Wheat | cytosol | 65.21 | 65.66 |
| HORVU4Hr1G074720.7 | Barley | plasma membrane | 66.36 | 65.6 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 64.75 | 65.2 |
| KRH11716 | Soybean | cytosol, golgi, plastid | 55.76 | 65.05 |
| EER95442 | Sorghum | mitochondrion | 65.44 | 64.84 |
| Zm00001d027827_P001 | Maize | cytosol, mitochondrion, nucleus | 64.75 | 64.01 |
| TraesCS1D01G136700.1 | Wheat | nucleus | 68.43 | 63.6 |
| HORVU1Hr1G035200.1 | Barley | plasma membrane | 68.2 | 62.32 |
| KRH36711 | Soybean | cytosol | 54.38 | 58.56 |
| HORVU3Hr1G116690.2 | Barley | mitochondrion | 65.67 | 58.52 |
| GSMUA_Achr4P03630_001 | Banana | plasma membrane | 61.98 | 31.68 |
| AT1G67480.1 | Thale cress | cytosol, mitochondrion | 22.35 | 25.8 |
| AT1G30090.1 | Thale cress | mitochondrion, plastid | 23.5 | 25.63 |
| AT1G22040.1 | Thale cress | plastid | 26.04 | 23.79 |
| AT1G27420.1 | Thale cress | cytosol, plastid | 18.89 | 23.7 |
| AT1G16250.2 | Thale cress | cytosol | 20.51 | 23.24 |
| AT3G63220.2 | Thale cress | cytosol | 18.66 | 23.01 |
| AT3G61350.2 | Thale cress | cytosol | 18.89 | 22.91 |
| AT2G24540.1 | Thale cress | cytosol | 17.74 | 20.7 |
| AT1G26930.1 | Thale cress | cytosol | 19.59 | 20.19 |
| AT5G60570.2 | Thale cress | cytosol | 18.2 | 20.1 |
| AT3G27150.1 | Thale cress | cytosol | 19.35 | 19.91 |
| AT1G14330.1 | Thale cress | nucleus | 18.2 | 17.91 |
| AT2G02870.1 | Thale cress | nucleus | 18.43 | 17.13 |
| AT5G40680.1 | Thale cress | mitochondrion | 15.67 | 16.39 |
| AT1G74510.2 | Thale cress | cytosol | 15.9 | 15.3 |
Protein Annotations
| Gene3D:2.120.10.80 | EntrezGene:841972 | MapMan:9.2.1.1.3 | UniProt:A0A178WEL3 | ProteinID:AAG51566.1 | ProteinID:AEE33217.1 |
| EMBL:AF370138 | ProteinID:ANM58177.1 | ArrayExpress:AT1G55270 | EnsemblPlantsGene:AT1G55270 | RefSeq:AT1G55270 | TAIR:AT1G55270 |
| RefSeq:AT1G55270-TAIR-G | EnsemblPlants:AT1G55270.1 | TAIR:AT1G55270.1 | EMBL:AY051069 | Unigene:At.68274 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031463 | InterPro:IPR001810 |
| InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | RefSeq:NP_001320632.1 | RefSeq:NP_564684.1 | ProteinID:OAP16828.1 |
| PFAM:PF00646 | PFAM:PF01344 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR24412 | PANTHER:PTHR24412:SF234 | UniProt:Q93W93 | SMART:SM00612 |
| SUPFAM:SSF117281 | SUPFAM:SSF81383 | UniParc:UPI00000A3EA5 | SEG:seg | : | : |
Description
F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
Coordinates
chr1:-:20617954..20620146
Molecular Weight (calculated)
49212.5 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.365
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.