Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27010_001 | Banana | cytosol | 88.56 | 87.5 |
| VIT_06s0004g00860.t01 | Wine grape | cytosol | 73.97 | 69.57 |
| EER91632 | Sorghum | plastid | 73.97 | 69.57 |
| Os10t0409900-01 | Rice | plastid | 74.7 | 69.46 |
| Solyc01g005970.2.1 | Tomato | cytosol | 73.48 | 69.11 |
| PGSC0003DMT400081852 | Potato | cytosol | 73.48 | 69.11 |
| Bra011908.1-P | Field mustard | mitochondrion | 72.75 | 68.74 |
| CDY08233 | Canola | mitochondrion | 72.51 | 68.51 |
| CDY26117 | Canola | cytosol | 72.51 | 68.51 |
| AT1G55270.1 | Thale cress | mitochondrion | 72.26 | 68.43 |
| Zm00001d032991_P001 | Maize | cytosol | 72.75 | 68.42 |
| TraesCS1B01G154600.1 | Wheat | plastid | 72.75 | 68.26 |
| KRH58897 | Soybean | cytosol | 72.26 | 67.96 |
| CDY02451 | Canola | cytosol | 71.78 | 67.82 |
| CDY10574 | Canola | cytosol | 71.78 | 67.82 |
| Os03t0167800-02 | Rice | cytosol | 72.26 | 67.81 |
| KRH42810 | Soybean | cytosol | 72.02 | 67.73 |
| TraesCS4D01G282200.1 | Wheat | cytosol | 68.61 | 67.63 |
| Bra030872.1-P | Field mustard | cytosol | 71.53 | 67.59 |
| PGSC0003DMT400034149 | Potato | cytosol | 71.78 | 67.51 |
| Solyc01g022740.2.1 | Tomato | cytosol | 71.29 | 67.05 |
| TraesCS3B01G611700.1 | Wheat | cytosol | 69.34 | 66.74 |
| TraesCS4A01G020200.1 | Wheat | cytosol | 69.83 | 66.74 |
| TraesCS3D01G540000.1 | Wheat | cytosol | 69.1 | 66.51 |
| TraesCS4B01G283400.1 | Wheat | cytosol | 69.1 | 66.05 |
| HORVU4Hr1G074720.7 | Barley | plasma membrane | 70.07 | 65.6 |
| CDY24045 | Canola | mitochondrion | 69.34 | 65.52 |
| TraesCS4B01G283500.1 | Wheat | cytosol | 68.61 | 65.43 |
| GSMUA_Achr7P08330_001 | Banana | cytosol | 62.53 | 65.23 |
| EER95442 | Sorghum | mitochondrion | 69.34 | 65.07 |
| CDY33062 | Canola | mitochondrion, plastid | 68.86 | 65.06 |
| Bra037989.1-P | Field mustard | cytosol, plastid | 68.86 | 65.06 |
| TraesCS3A01G534600.1 | Wheat | cytosol | 67.88 | 64.73 |
| GSMUA_Achr2P17100_001 | Banana | cytosol, plastid | 63.5 | 63.97 |
| TraesCS1D01G136700.1 | Wheat | nucleus | 72.51 | 63.81 |
| Zm00001d027827_P001 | Maize | cytosol, mitochondrion, nucleus | 67.88 | 63.55 |
| HORVU1Hr1G035200.1 | Barley | plasma membrane | 72.02 | 62.32 |
| KRH11716 | Soybean | cytosol, golgi, plastid | 53.04 | 58.6 |
| HORVU3Hr1G116690.2 | Barley | mitochondrion | 68.86 | 58.11 |
| KRH36711 | Soybean | cytosol | 51.09 | 52.11 |
| GSMUA_Achr4P03630_001 | Banana | plasma membrane | 74.7 | 36.16 |
| GSMUA_Achr6P31190_001 | Banana | mitochondrion | 26.28 | 26.28 |
| GSMUA_Achr3P16120_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 23.11 | 24.87 |
| GSMUA_Achr2P22090_001 | Banana | cytosol | 21.9 | 23.87 |
| GSMUA_Achr6P20750_001 | Banana | cytosol, mitochondrion, plasma membrane, plastid | 22.63 | 23.85 |
| GSMUA_Achr6P04050_001 | Banana | cytosol | 26.28 | 23.74 |
| GSMUA_Achr8P28270_001 | Banana | cytosol | 22.14 | 23.7 |
| GSMUA_Achr6P24370_001 | Banana | cytosol | 18.73 | 22.19 |
| GSMUA_Achr4P20790_001 | Banana | extracellular | 19.95 | 21.75 |
| GSMUA_AchrUn_... | Banana | cytosol | 17.52 | 20.17 |
| GSMUA_Achr10P... | Banana | cytosol | 24.82 | 19.62 |
| GSMUA_Achr9P30470_001 | Banana | cytosol | 18.25 | 19.18 |
| GSMUA_Achr4P09990_001 | Banana | cytosol | 18.98 | 18.18 |
| GSMUA_Achr8P01380_001 | Banana | cytosol | 16.55 | 17.89 |
| GSMUA_Achr3P23350_001 | Banana | cytosol, extracellular | 17.52 | 17.87 |
| GSMUA_Achr1P21630_001 | Banana | cytosol | 16.3 | 17.77 |
| GSMUA_Achr7P20970_001 | Banana | cytosol | 16.79 | 17.47 |
| GSMUA_Achr4P00520_001 | Banana | cytosol | 16.06 | 16.97 |
| GSMUA_Achr2P18470_001 | Banana | cytosol | 17.52 | 16.9 |
| GSMUA_Achr11P... | Banana | cytosol | 17.76 | 16.59 |
| GSMUA_Achr10P... | Banana | nucleus | 16.79 | 15.86 |
| GSMUA_Achr8P17960_001 | Banana | nucleus | 15.57 | 15.38 |
| GSMUA_Achr3P01570_001 | Banana | golgi | 17.27 | 14.52 |
| GSMUA_Achr2P14920_001 | Banana | mitochondrion | 16.55 | 14.23 |
| GSMUA_Achr4P24130_001 | Banana | nucleus | 17.27 | 13.73 |
Protein Annotations
| Gene3D:2.120.10.80 | MapMan:9.2.1.1.3 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr3G29560_001 | EnsemblPlants:GSMUA_Achr3P29560_001 | EnsemblPlants:GSMUA_Achr3T29560_001 | InterPro:IPR001810 | InterPro:IPR015915 |
| InterPro:Kelch-typ_b-propeller | InterPro:Kelch_1 | UniProt:M0SIX2 | PFAM:PF00646 | PFAM:PF01344 | PFAM:PF13964 |
| PANTHER:PTHR24412 | PANTHER:PTHR24412:SF234 | SMART:SM00256 | SMART:SM00612 | SUPFAM:SSF117281 | SUPFAM:SSF81383 |
| UniParc:UPI000294AB50 | SEG:seg | : | : | : | : |
Description
F-box/kelch-repeat protein At1g55270 [Source:GMGC_GENE;Acc:GSMUA_Achr3G29560_001]
Coordinates
chr3:-:28662587..28665264
Molecular Weight (calculated)
46000.2 Da
IEP (calculated)
9.625
GRAVY (calculated)
-0.299
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRTAPNSQV GSDRVVRVQA PLVDSVSCYC KVDAGLKTVA GARKFVPGAK LCLQPEIVPH GPRIRNSRRE RSRTQAPLLP GLPDDLAIAC LIRVPRVEHL
101: NLRLVCKRWN RLLSGNYYYS LRKKLGMAEE WVYVIKRARD GKISWNAFDP NHQLWRPLPP VPADYSEALG FGCAVLSGCY LYLFGGKDPS KGSMRRVVFY
201: NARTNKWHRA PDMLRKRHFF GSCVVNNCLY VAGGECEGNQ RTLRSAEVYD PNKNRWTSIA EMSTGMVPLI GVVYEGNWFL KGLDSDGQDV SEVYAPTTNT
301: WDGCKLRVYE GATDSWNKFM DSEHHLGNSK AFEAASFVSL NGKLGIIRNN MSISLIDVTN PVSSIETNSA RVWEAIAGKG QLKNFVSSLW SSLAGRSWLK
401: DHIVHCQVLQ A
101: NLRLVCKRWN RLLSGNYYYS LRKKLGMAEE WVYVIKRARD GKISWNAFDP NHQLWRPLPP VPADYSEALG FGCAVLSGCY LYLFGGKDPS KGSMRRVVFY
201: NARTNKWHRA PDMLRKRHFF GSCVVNNCLY VAGGECEGNQ RTLRSAEVYD PNKNRWTSIA EMSTGMVPLI GVVYEGNWFL KGLDSDGQDV SEVYAPTTNT
301: WDGCKLRVYE GATDSWNKFM DSEHHLGNSK AFEAASFVSL NGKLGIIRNN MSISLIDVTN PVSSIETNSA RVWEAIAGKG QLKNFVSSLW SSLAGRSWLK
401: DHIVHCQVLQ A
001: MDLSSQRQSP NGSRGFRLQA PLVDSVSCYC RVDSGLKTVV EARKFVPGSK LCIQPDINPN AHRRKNSKRE RTRIQPPLLP GLPDDLAVAC LIRVPRAEHR
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
101: KLRLVCKRWY RLASGNFFYS QRKLLGMSEE WVYVFKRDRD GKISWNTFDP ISQLWQPLPP VPREYSEAVG FGCAVLSGCH LYLFGGKDPL RGSMRRVIFY
201: NARTNKWHRA PDMLRKRHFF GCCVINNCLY VAGGECEGIQ RTLRSAEVYD PNKNRWSFIA DMSTAMVPLI GVVYDKKWFL KGLGSHQLVM SEAYDPEVNS
301: WSPVSDGMVA GWRNPCTSLN GRLYGLDCRD GCKLRVFDES TDSWNKFMDS KAHLGNSKSL EAAALVPLHN KLCIIRNNMS MSLVDVSNPD KNNPRLWENI
401: AVKGQSKSIL SNIWSSIAGR ALKSHIVHCQ VLQA
Arabidopsis Description
F-box/kelch-repeat protein At1g55270 [Source:UniProtKB/Swiss-Prot;Acc:Q93W93]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.